Hb_001152_040

Information

Type -
Description -
Location Contig1152: 126398-126892
Sequence    

Annotation

kegg
ID rcu:RCOM_1439860
description peripheral-type benzodiazepine receptor, putative
nr
ID XP_002531881.1
description peripheral-type benzodiazepine receptor, putative [Ricinus communis]
swissprot
ID O82245
description Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1
trembl
ID B9T0W2
description Peripheral-type benzodiazepine receptor, putative OS=Ricinus communis GN=RCOM_1439860 PE=4 SV=1
Gene Ontology
ID GO:0005795
description translocator protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001152_040 0.0 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
2 Hb_000009_100 0.032522176 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
3 Hb_132880_020 0.0366873526 - - hypothetical protein VITISV_026364 [Vitis vinifera]
4 Hb_064194_010 0.0755614202 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
5 Hb_177179_020 0.0857977098 - - conserved hypothetical protein [Ricinus communis]
6 Hb_179367_020 0.0885796799 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_001976_070 0.0916771631 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
8 Hb_000908_030 0.1030383703 - - small heat-shock protein, putative [Ricinus communis]
9 Hb_013394_110 0.1104313678 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000483_120 0.1133925917 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
11 Hb_001488_120 0.1160496793 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
12 Hb_000700_020 0.1249455144 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
13 Hb_109304_010 0.1274488668 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
14 Hb_157881_010 0.1279094183 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_087717_010 0.1359943961 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
16 Hb_032907_020 0.1364246177 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_000295_140 0.1364304379 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
18 Hb_086720_010 0.1364790483 - - CTV.19 [Citrus trifoliata]
19 Hb_053224_010 0.1365017985 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
20 Hb_007407_020 0.1365130084 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001152_040 Hb_001152_040 Hb_000009_100 Hb_000009_100 Hb_001152_040--Hb_000009_100 Hb_132880_020 Hb_132880_020 Hb_001152_040--Hb_132880_020 Hb_064194_010 Hb_064194_010 Hb_001152_040--Hb_064194_010 Hb_177179_020 Hb_177179_020 Hb_001152_040--Hb_177179_020 Hb_179367_020 Hb_179367_020 Hb_001152_040--Hb_179367_020 Hb_001976_070 Hb_001976_070 Hb_001152_040--Hb_001976_070 Hb_000009_100--Hb_132880_020 Hb_013394_110 Hb_013394_110 Hb_000009_100--Hb_013394_110 Hb_000009_100--Hb_064194_010 Hb_000009_100--Hb_001976_070 Hb_001488_120 Hb_001488_120 Hb_000009_100--Hb_001488_120 Hb_132880_020--Hb_001976_070 Hb_132880_020--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_132880_020--Hb_000908_030 Hb_157881_010 Hb_157881_010 Hb_132880_020--Hb_157881_010 Hb_064194_010--Hb_132880_020 Hb_000700_020 Hb_000700_020 Hb_064194_010--Hb_000700_020 Hb_064194_010--Hb_177179_020 Hb_109304_010 Hb_109304_010 Hb_064194_010--Hb_109304_010 Hb_000483_120 Hb_000483_120 Hb_177179_020--Hb_000483_120 Hb_057721_010 Hb_057721_010 Hb_177179_020--Hb_057721_010 Hb_177179_020--Hb_179367_020 Hb_119583_030 Hb_119583_030 Hb_177179_020--Hb_119583_030 Hb_177179_020--Hb_000908_030 Hb_000025_800 Hb_000025_800 Hb_177179_020--Hb_000025_800 Hb_179367_020--Hb_000908_030 Hb_179367_020--Hb_001976_070 Hb_179367_020--Hb_000025_800 Hb_179367_020--Hb_000483_120 Hb_001976_070--Hb_000908_030 Hb_001976_070--Hb_157881_010 Hb_003878_130 Hb_003878_130 Hb_001976_070--Hb_003878_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0604507 0.637236 0.948256 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis