Hb_001153_080

Information

Type transcription factor
Description TF Family: MIKC
Location Contig1153: 30055-41323
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11960g
description POPTRDRAFT_554289; hypothetical protein
nr
ID XP_012087037.1
description PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
swissprot
ID O82743
description Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1
trembl
ID A0A067K164
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20695 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04597: 30115-40999 , PASA_asmbl_04598: 40510-40828 , PASA_asmbl_04599: 30115-41100 , PASA_asmbl_04600: 37911-38311 , PASA_asmbl_04602: 36687-36936
cDNA
(Sanger)
(ID:Location)		 019_E18.ab1: 30745-40999 , 045_G09.ab1: 30730-40999

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_080 0.0 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
2 Hb_000045_190 0.0774948885 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
3 Hb_000161_050 0.0802523292 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001341_130 0.0843556037 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000634_050 0.0945928375 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
6 Hb_011609_180 0.0992936692 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
7 Hb_000188_130 0.100293779 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
8 Hb_002781_020 0.1018203041 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
9 Hb_001722_040 0.1033650602 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
10 Hb_002447_030 0.1074627237 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
11 Hb_000212_260 0.1080960106 - - acyl-carrier-protein [Triadica sebifera]
12 Hb_000051_040 0.1086329182 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
13 Hb_002529_100 0.113690289 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
14 Hb_007021_020 0.1147270202 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
15 Hb_009404_020 0.1154304711 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003376_130 0.1158908758 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
17 Hb_000922_270 0.1170751887 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
18 Hb_000526_020 0.1178690235 - - thioredoxin-like family protein [Hevea brasiliensis]
19 Hb_000479_180 0.1180184406 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000798_030 0.1187693728 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]

Gene co-expression network

sample Hb_001153_080 Hb_001153_080 Hb_000045_190 Hb_000045_190 Hb_001153_080--Hb_000045_190 Hb_000161_050 Hb_000161_050 Hb_001153_080--Hb_000161_050 Hb_001341_130 Hb_001341_130 Hb_001153_080--Hb_001341_130 Hb_000634_050 Hb_000634_050 Hb_001153_080--Hb_000634_050 Hb_011609_180 Hb_011609_180 Hb_001153_080--Hb_011609_180 Hb_000188_130 Hb_000188_130 Hb_001153_080--Hb_000188_130 Hb_000045_190--Hb_000634_050 Hb_000798_030 Hb_000798_030 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000045_190--Hb_002529_100 Hb_002781_020 Hb_002781_020 Hb_000161_050--Hb_002781_020 Hb_000212_260 Hb_000212_260 Hb_000161_050--Hb_000212_260 Hb_011689_050 Hb_011689_050 Hb_000161_050--Hb_011689_050 Hb_010172_030 Hb_010172_030 Hb_000161_050--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000161_050--Hb_009851_100 Hb_001341_130--Hb_000188_130 Hb_001341_130--Hb_000045_190 Hb_001341_130--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_001341_130--Hb_003581_090 Hb_002759_230 Hb_002759_230 Hb_001341_130--Hb_002759_230 Hb_000417_110 Hb_000417_110 Hb_000634_050--Hb_000417_110 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_000634_050--Hb_002781_020 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_000085_200 Hb_000085_200 Hb_011609_180--Hb_000085_200 Hb_011609_180--Hb_000634_050 Hb_011609_180--Hb_000212_260 Hb_007741_050 Hb_007741_050 Hb_011609_180--Hb_007741_050 Hb_000144_110 Hb_000144_110 Hb_011609_180--Hb_000144_110 Hb_000648_060 Hb_000648_060 Hb_011609_180--Hb_000648_060 Hb_000188_130--Hb_000045_190 Hb_000188_130--Hb_002759_230 Hb_000188_130--Hb_001045_080 Hb_000188_130--Hb_002529_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.1606 5.43442 14.5808 13.6815 51.9893 48.7678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
166.121 148.948 65.6434 30.4781 9.74379

CAGE analysis