Hb_001153_130

Information

Type -
Description -
Location Contig1153: 73491-86869
Sequence    

Annotation

kegg
ID rcu:RCOM_1683030
description Cucumisin precursor, putative (EC:3.4.21.25)
nr
ID CBI31602.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q39547
description Cucumisin OS=Cucumis melo PE=1 SV=1
trembl
ID F6HNS9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g02490 PE=4 SV=1
Gene Ontology
ID GO:0004252
description cucumisin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_130 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_032733_010 0.201163045 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
3 Hb_000690_060 0.2679346385 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
4 Hb_005332_150 0.2771531307 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
5 Hb_000189_250 0.277351303 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
6 Hb_003427_080 0.2790392323 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
7 Hb_000754_050 0.2812626551 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
8 Hb_003878_080 0.2817273781 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
9 Hb_005588_110 0.2823623514 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
10 Hb_000120_900 0.283655068 - - catalase [Hevea brasiliensis]
11 Hb_000038_020 0.2868746209 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
12 Hb_000053_120 0.2877700282 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
13 Hb_023675_030 0.2878556803 - - -
14 Hb_000977_270 0.2883918169 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
15 Hb_005466_010 0.2903259692 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
16 Hb_000159_020 0.2923072429 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
17 Hb_003327_020 0.2932054932 - - PREDICTED: phytosulfokine receptor 2-like, partial [Jatropha curcas]
18 Hb_000296_080 0.293959197 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
19 Hb_000699_080 0.2940836119 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
20 Hb_016734_030 0.2941553031 - - -

Gene co-expression network

sample Hb_001153_130 Hb_001153_130 Hb_032733_010 Hb_032733_010 Hb_001153_130--Hb_032733_010 Hb_000690_060 Hb_000690_060 Hb_001153_130--Hb_000690_060 Hb_005332_150 Hb_005332_150 Hb_001153_130--Hb_005332_150 Hb_000189_250 Hb_000189_250 Hb_001153_130--Hb_000189_250 Hb_003427_080 Hb_003427_080 Hb_001153_130--Hb_003427_080 Hb_000754_050 Hb_000754_050 Hb_001153_130--Hb_000754_050 Hb_003032_090 Hb_003032_090 Hb_032733_010--Hb_003032_090 Hb_006816_040 Hb_006816_040 Hb_032733_010--Hb_006816_040 Hb_002835_090 Hb_002835_090 Hb_032733_010--Hb_002835_090 Hb_004611_040 Hb_004611_040 Hb_032733_010--Hb_004611_040 Hb_000038_020 Hb_000038_020 Hb_032733_010--Hb_000038_020 Hb_001155_020 Hb_001155_020 Hb_032733_010--Hb_001155_020 Hb_000976_190 Hb_000976_190 Hb_000690_060--Hb_000976_190 Hb_001220_050 Hb_001220_050 Hb_000690_060--Hb_001220_050 Hb_000878_030 Hb_000878_030 Hb_000690_060--Hb_000878_030 Hb_001723_030 Hb_001723_030 Hb_000690_060--Hb_001723_030 Hb_000023_370 Hb_000023_370 Hb_000690_060--Hb_000023_370 Hb_000537_070 Hb_000537_070 Hb_000690_060--Hb_000537_070 Hb_005332_150--Hb_000038_020 Hb_004109_130 Hb_004109_130 Hb_005332_150--Hb_004109_130 Hb_000966_040 Hb_000966_040 Hb_005332_150--Hb_000966_040 Hb_168031_020 Hb_168031_020 Hb_005332_150--Hb_168031_020 Hb_000069_370 Hb_000069_370 Hb_005332_150--Hb_000069_370 Hb_166127_030 Hb_166127_030 Hb_005332_150--Hb_166127_030 Hb_000934_020 Hb_000934_020 Hb_000189_250--Hb_000934_020 Hb_000189_250--Hb_166127_030 Hb_000640_260 Hb_000640_260 Hb_000189_250--Hb_000640_260 Hb_036790_120 Hb_036790_120 Hb_000189_250--Hb_036790_120 Hb_007576_150 Hb_007576_150 Hb_000189_250--Hb_007576_150 Hb_000495_080 Hb_000495_080 Hb_000189_250--Hb_000495_080 Hb_000402_170 Hb_000402_170 Hb_003427_080--Hb_000402_170 Hb_000053_120 Hb_000053_120 Hb_003427_080--Hb_000053_120 Hb_003427_080--Hb_000038_020 Hb_000667_140 Hb_000667_140 Hb_003427_080--Hb_000667_140 Hb_003077_130 Hb_003077_130 Hb_003427_080--Hb_003077_130 Hb_003427_080--Hb_166127_030 Hb_001484_080 Hb_001484_080 Hb_000754_050--Hb_001484_080 Hb_000296_080 Hb_000296_080 Hb_000754_050--Hb_000296_080 Hb_005588_110 Hb_005588_110 Hb_000754_050--Hb_005588_110 Hb_000754_050--Hb_000402_170 Hb_000754_050--Hb_036790_120 Hb_000977_270 Hb_000977_270 Hb_000754_050--Hb_000977_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00819789 0.00404436 0.0156171 0.00278998 0.0153401 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00730434 0.0140524 0.00289136 0.0784094

CAGE analysis