Hb_001153_180

Information

Type -
Description -
Location Contig1153: 115430-124221
Sequence    

Annotation

kegg
ID rcu:RCOM_1683290
description hypothetical protein
nr
ID XP_012087019.1
description PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
swissprot
ID Q93ZQ5
description SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2
trembl
ID B9RC11
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1683290 PE=4 SV=1
Gene Ontology
ID GO:0016021
description spx domain-containing membrane protein at4g22990-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04621: 115528-123092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_180 0.0 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
2 Hb_000451_070 0.1237391933 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_189208_020 0.131162235 - - LRX2, putative [Ricinus communis]
4 Hb_011618_060 0.1343100491 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
5 Hb_001894_050 0.1388003593 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
6 Hb_092462_020 0.1395600053 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
7 Hb_002042_130 0.1447874587 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
8 Hb_002701_220 0.1450235064 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
9 Hb_000061_120 0.1462674019 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
10 Hb_007382_120 0.1465522067 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
11 Hb_004724_210 0.146807114 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000010_190 0.1468248599 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
13 Hb_011909_140 0.1470901483 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
14 Hb_034688_020 0.1485966335 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
15 Hb_001825_060 0.1498053626 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
16 Hb_001648_030 0.1504515294 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
17 Hb_000000_230 0.1513699068 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
18 Hb_088753_010 0.1516904524 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
19 Hb_000521_240 0.1560743961 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
20 Hb_017987_050 0.1562237609 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001153_180 Hb_001153_180 Hb_000451_070 Hb_000451_070 Hb_001153_180--Hb_000451_070 Hb_189208_020 Hb_189208_020 Hb_001153_180--Hb_189208_020 Hb_011618_060 Hb_011618_060 Hb_001153_180--Hb_011618_060 Hb_001894_050 Hb_001894_050 Hb_001153_180--Hb_001894_050 Hb_092462_020 Hb_092462_020 Hb_001153_180--Hb_092462_020 Hb_002042_130 Hb_002042_130 Hb_001153_180--Hb_002042_130 Hb_000402_210 Hb_000402_210 Hb_000451_070--Hb_000402_210 Hb_000451_070--Hb_001894_050 Hb_088753_010 Hb_088753_010 Hb_000451_070--Hb_088753_010 Hb_000451_070--Hb_189208_020 Hb_000451_070--Hb_002042_130 Hb_002097_200 Hb_002097_200 Hb_189208_020--Hb_002097_200 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080 Hb_002027_350 Hb_002027_350 Hb_011618_060--Hb_002027_350 Hb_000099_150 Hb_000099_150 Hb_011618_060--Hb_000099_150 Hb_006153_110 Hb_006153_110 Hb_011618_060--Hb_006153_110 Hb_000164_100 Hb_000164_100 Hb_011618_060--Hb_000164_100 Hb_000010_190 Hb_000010_190 Hb_011618_060--Hb_000010_190 Hb_001691_140 Hb_001691_140 Hb_011618_060--Hb_001691_140 Hb_001817_160 Hb_001817_160 Hb_001894_050--Hb_001817_160 Hb_001894_050--Hb_001564_080 Hb_000915_160 Hb_000915_160 Hb_001894_050--Hb_000915_160 Hb_001894_050--Hb_002042_130 Hb_002184_110 Hb_002184_110 Hb_092462_020--Hb_002184_110 Hb_004724_270 Hb_004724_270 Hb_092462_020--Hb_004724_270 Hb_000729_030 Hb_000729_030 Hb_092462_020--Hb_000729_030 Hb_002043_030 Hb_002043_030 Hb_092462_020--Hb_002043_030 Hb_092462_020--Hb_000010_190 Hb_000161_130 Hb_000161_130 Hb_092462_020--Hb_000161_130 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_000302_260 Hb_000302_260 Hb_002042_130--Hb_000302_260 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.94266 14.3648 4.93652 5.06258 2.23275 2.14232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4956 10.565 4.50453 6.98917 6.93578

CAGE analysis