Hb_001153_250

Information

Type transcription factor
Description TF Family: ERF
Location Contig1153: 215751-216428
Sequence    

Annotation

kegg
ID rcu:RCOM_1683570
description Dehydration-responsive element-binding protein 1F, putative
nr
ID XP_012087007.1
description PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
swissprot
ID Q9SYS6
description Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2
trembl
ID A0A067JZT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20671 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dehydration-responsive element binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_250 0.0 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
2 Hb_029664_010 0.0796336576 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000627_130 0.0878088384 - - Polcalcin Jun o, putative [Ricinus communis]
4 Hb_006615_060 0.0998978427 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000959_240 0.1044638318 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
6 Hb_007858_020 0.1077308222 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
7 Hb_003207_230 0.1100918247 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
8 Hb_005381_010 0.1105002987 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
9 Hb_004899_010 0.115365112 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
10 Hb_005054_330 0.1153791681 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
11 Hb_004612_020 0.1199418345 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
12 Hb_000164_160 0.1201605309 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
13 Hb_120011_010 0.121121756 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_182167_010 0.122851206 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
15 Hb_124953_010 0.1240937316 - - hypothetical protein RCOM_1314600 [Ricinus communis]
16 Hb_001619_140 0.1269139869 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_109591_010 0.1329392505 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_008725_220 0.1338618541 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
19 Hb_001310_010 0.1343280911 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
20 Hb_112703_010 0.1348717468 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]

Gene co-expression network

sample Hb_001153_250 Hb_001153_250 Hb_029664_010 Hb_029664_010 Hb_001153_250--Hb_029664_010 Hb_000627_130 Hb_000627_130 Hb_001153_250--Hb_000627_130 Hb_006615_060 Hb_006615_060 Hb_001153_250--Hb_006615_060 Hb_000959_240 Hb_000959_240 Hb_001153_250--Hb_000959_240 Hb_007858_020 Hb_007858_020 Hb_001153_250--Hb_007858_020 Hb_003207_230 Hb_003207_230 Hb_001153_250--Hb_003207_230 Hb_029664_010--Hb_000627_130 Hb_006907_020 Hb_006907_020 Hb_029664_010--Hb_006907_020 Hb_029664_010--Hb_007858_020 Hb_008202_020 Hb_008202_020 Hb_029664_010--Hb_008202_020 Hb_124953_010 Hb_124953_010 Hb_029664_010--Hb_124953_010 Hb_000627_130--Hb_007858_020 Hb_000627_130--Hb_124953_010 Hb_109591_010 Hb_109591_010 Hb_000627_130--Hb_109591_010 Hb_005054_330 Hb_005054_330 Hb_000627_130--Hb_005054_330 Hb_164146_020 Hb_164146_020 Hb_006615_060--Hb_164146_020 Hb_005381_010 Hb_005381_010 Hb_006615_060--Hb_005381_010 Hb_074672_010 Hb_074672_010 Hb_006615_060--Hb_074672_010 Hb_077694_010 Hb_077694_010 Hb_006615_060--Hb_077694_010 Hb_120011_010 Hb_120011_010 Hb_006615_060--Hb_120011_010 Hb_008725_220 Hb_008725_220 Hb_000959_240--Hb_008725_220 Hb_000959_240--Hb_007858_020 Hb_000959_240--Hb_005054_330 Hb_167186_010 Hb_167186_010 Hb_000959_240--Hb_167186_010 Hb_101437_010 Hb_101437_010 Hb_000959_240--Hb_101437_010 Hb_000025_490 Hb_000025_490 Hb_000959_240--Hb_000025_490 Hb_007858_020--Hb_005054_330 Hb_004032_220 Hb_004032_220 Hb_007858_020--Hb_004032_220 Hb_007858_020--Hb_124953_010 Hb_000032_150 Hb_000032_150 Hb_007858_020--Hb_000032_150 Hb_007858_020--Hb_167186_010 Hb_003207_230--Hb_124953_010 Hb_003207_230--Hb_000032_150 Hb_099188_010 Hb_099188_010 Hb_003207_230--Hb_099188_010 Hb_003207_230--Hb_005054_330 Hb_047955_010 Hb_047955_010 Hb_003207_230--Hb_047955_010 Hb_000359_230 Hb_000359_230 Hb_003207_230--Hb_000359_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.44481 6.10333 1.57221 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.524024

CAGE analysis