Hb_001155_020

Information

Type -
Description -
Location Contig1155: 25340-42840
Sequence    

Annotation

kegg
ID pxb:103963317
description probable LRR receptor-like serine/threonine-protein kinase At1g06840
nr
ID XP_007017105.1
description Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
swissprot
ID C0LGD7
description Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=2 SV=2
trembl
ID A0A061H0G1
description Leucine-rich repeat protein kinase family protein isoform 2 OS=Theobroma cacao GN=TCM_042309 PE=3 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at1g06840 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04674: 26002-28020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001155_020 0.0 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
2 Hb_001338_160 0.0794725613 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
3 Hb_072212_010 0.1305851078 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
4 Hb_003963_040 0.1410601752 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
5 Hb_004611_040 0.1452023737 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_002835_090 0.1538635351 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
7 Hb_001338_150 0.1632962633 - - hypothetical chloroplast RF1 [Dillenia indica]
8 Hb_162094_010 0.1633169337 - - RNA polymerase alpha subunit [Hevea brasiliensis]
9 Hb_000254_120 0.1687815336 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006925_030 0.1732235203 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
11 Hb_003032_090 0.176558734 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
12 Hb_000667_140 0.1787366428 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
13 Hb_007504_040 0.1846176829 - - hypothetical chloroplast RF2 [Fragaria iinumae]
14 Hb_005399_050 0.1855798736 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
15 Hb_003427_080 0.1876213423 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
16 Hb_000395_090 0.1892934752 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
17 Hb_007595_050 0.1953977314 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
18 Hb_032733_010 0.1990282119 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
19 Hb_071126_010 0.2050089463 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_001377_060 0.2062954647 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001155_020 Hb_001155_020 Hb_001338_160 Hb_001338_160 Hb_001155_020--Hb_001338_160 Hb_072212_010 Hb_072212_010 Hb_001155_020--Hb_072212_010 Hb_003963_040 Hb_003963_040 Hb_001155_020--Hb_003963_040 Hb_004611_040 Hb_004611_040 Hb_001155_020--Hb_004611_040 Hb_002835_090 Hb_002835_090 Hb_001155_020--Hb_002835_090 Hb_001338_150 Hb_001338_150 Hb_001155_020--Hb_001338_150 Hb_001338_160--Hb_003963_040 Hb_001338_160--Hb_001338_150 Hb_162094_010 Hb_162094_010 Hb_001338_160--Hb_162094_010 Hb_003032_090 Hb_003032_090 Hb_001338_160--Hb_003032_090 Hb_001338_160--Hb_002835_090 Hb_000395_090 Hb_000395_090 Hb_072212_010--Hb_000395_090 Hb_017043_030 Hb_017043_030 Hb_072212_010--Hb_017043_030 Hb_000053_120 Hb_000053_120 Hb_072212_010--Hb_000053_120 Hb_072212_010--Hb_004611_040 Hb_072212_010--Hb_001338_160 Hb_003963_040--Hb_001338_150 Hb_003963_040--Hb_003032_090 Hb_005399_040 Hb_005399_040 Hb_003963_040--Hb_005399_040 Hb_000156_240 Hb_000156_240 Hb_003963_040--Hb_000156_240 Hb_005399_050 Hb_005399_050 Hb_003963_040--Hb_005399_050 Hb_003427_080 Hb_003427_080 Hb_004611_040--Hb_003427_080 Hb_004611_040--Hb_002835_090 Hb_000667_140 Hb_000667_140 Hb_004611_040--Hb_000667_140 Hb_000402_170 Hb_000402_170 Hb_004611_040--Hb_000402_170 Hb_004611_040--Hb_001338_160 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_011900_020 Hb_011900_020 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_007595_050 Hb_007595_050 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370 Hb_001338_150--Hb_003032_090 Hb_003693_030 Hb_003693_030 Hb_001338_150--Hb_003693_030 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_001338_150--Hb_000156_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.486924 0.21948 2.3796 0.218879 0.471476 0.864314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101725 0.182972 0.13125 0.226788 8.00271

CAGE analysis