Hb_001155_030

Information

Type -
Description -
Location Contig1155: 56900-58483
Sequence    

Annotation

kegg
ID tcc:TCM_042310
description Ribosomal protein L16p/L10e family protein
nr
ID ADR71234.1
description 60S ribosomal protein L10A [Hevea brasiliensis]
swissprot
ID Q9SPB3
description 60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1
trembl
ID I3NMJ7
description 60S ribosomal protein L10A OS=Hevea brasiliensis GN=RPL10A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04676: 55922-58471
cDNA
(Sanger)
(ID:Location)		 001_C04.ab1: 55925-58204 , 002_K10.ab1: 55925-58243 , 007_F06.ab1: 55926-58259 , 008_I15.ab1: 55925-58220 , 009_C06.ab1: 55926-58146 , 010_L15.ab1: 55922-58241 , 014_E07.ab1: 55926-58203 , 023_N03.ab1: 55925-58134 , 032_E15.ab1: 55926-58221 , 036_P22.ab1: 55926-58213 , 040_C14.ab1: 55926-58240 , 042_M16.ab1: 55926-58243 , 045_D22.ab1: 55925-58258 , 045_P13.ab1: 55926-58239 , 052_E14.ab1: 55925-58239

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001155_030 0.0 - - 60S ribosomal protein L10A [Hevea brasiliensis]
2 Hb_000028_140 0.0781979983 - - surfeit locus protein, putative [Ricinus communis]
3 Hb_001829_060 0.0892859048 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
4 Hb_006641_010 0.0925654595 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
5 Hb_001242_110 0.0949113869 - - 40S ribosomal protein S18, putative [Ricinus communis]
6 Hb_005731_170 0.0968995728 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
7 Hb_009666_040 0.0970402912 - - glutathione transferase, putative [Ricinus communis]
8 Hb_000239_010 0.0977490209 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_002701_050 0.0986304951 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
10 Hb_000329_310 0.1006520832 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
11 Hb_000024_030 0.1028992168 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
12 Hb_000444_050 0.1037833058 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
13 Hb_000671_150 0.1043934847 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
14 Hb_001141_280 0.1073866695 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
15 Hb_027073_040 0.1075653728 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
16 Hb_001862_100 0.1080338963 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
17 Hb_116898_010 0.1103364415 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
18 Hb_000751_130 0.1104841301 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
19 Hb_000205_270 0.1104864991 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
20 Hb_001881_020 0.1110224757 - - clathrin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001155_030 Hb_001155_030 Hb_000028_140 Hb_000028_140 Hb_001155_030--Hb_000028_140 Hb_001829_060 Hb_001829_060 Hb_001155_030--Hb_001829_060 Hb_006641_010 Hb_006641_010 Hb_001155_030--Hb_006641_010 Hb_001242_110 Hb_001242_110 Hb_001155_030--Hb_001242_110 Hb_005731_170 Hb_005731_170 Hb_001155_030--Hb_005731_170 Hb_009666_040 Hb_009666_040 Hb_001155_030--Hb_009666_040 Hb_027073_040 Hb_027073_040 Hb_000028_140--Hb_027073_040 Hb_000028_140--Hb_001242_110 Hb_000239_010 Hb_000239_010 Hb_000028_140--Hb_000239_010 Hb_000227_230 Hb_000227_230 Hb_000028_140--Hb_000227_230 Hb_003996_020 Hb_003996_020 Hb_000028_140--Hb_003996_020 Hb_001109_020 Hb_001109_020 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_000046_110 Hb_000046_110 Hb_001829_060--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001829_060--Hb_003927_130 Hb_001829_060--Hb_009666_040 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_010436_060 Hb_010436_060 Hb_006641_010--Hb_010436_060 Hb_005117_010 Hb_005117_010 Hb_006641_010--Hb_005117_010 Hb_074979_020 Hb_074979_020 Hb_006641_010--Hb_074979_020 Hb_006641_010--Hb_000028_140 Hb_002759_060 Hb_002759_060 Hb_006641_010--Hb_002759_060 Hb_148209_080 Hb_148209_080 Hb_001242_110--Hb_148209_080 Hb_001242_110--Hb_003996_020 Hb_001242_110--Hb_000227_230 Hb_015175_030 Hb_015175_030 Hb_001242_110--Hb_015175_030 Hb_001242_110--Hb_027073_040 Hb_003455_040 Hb_003455_040 Hb_005731_170--Hb_003455_040 Hb_001998_050 Hb_001998_050 Hb_005731_170--Hb_001998_050 Hb_002374_390 Hb_002374_390 Hb_005731_170--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_005731_170--Hb_148200_010 Hb_003376_030 Hb_003376_030 Hb_005731_170--Hb_003376_030 Hb_005731_170--Hb_001829_060 Hb_001141_280 Hb_001141_280 Hb_009666_040--Hb_001141_280 Hb_009666_040--Hb_000239_010 Hb_000205_270 Hb_000205_270 Hb_009666_040--Hb_000205_270 Hb_009666_040--Hb_000329_310 Hb_000979_230 Hb_000979_230 Hb_009666_040--Hb_000979_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
597.893 399.88 436.097 461.424 601.409 1951.25
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1701.86 2244.88 1974.98 980.669 252.192

CAGE analysis