Hb_001155_040

Information

Type -
Description -
Location Contig1155: 67752-69399
Sequence    

Annotation

kegg
ID egr:104454482
description cytochrome b-c1 complex subunit 8
nr
ID XP_010067635.1
description PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
swissprot
ID P46269
description Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2
trembl
ID A0A059BJE6
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03166 PE=4 SV=1
Gene Ontology
ID GO:0005743
description cytochrome b-c1 complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04678: 67771-69413 , PASA_asmbl_04679: 68187-68626
cDNA
(Sanger)
(ID:Location)		 012_J12.ab1: 67799-69381 , 017_H13.ab1: 67797-69330 , 034_G22.ab1: 67883-69413 , 038_C10.ab1: 67797-69381

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001155_040 0.0 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
2 Hb_000087_130 0.0635304949 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
3 Hb_006452_040 0.0641400667 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
4 Hb_005463_140 0.0722195107 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
5 Hb_000062_390 0.076320085 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
6 Hb_007317_160 0.0765864775 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
7 Hb_000389_080 0.0808209154 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
8 Hb_000948_220 0.0828610902 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
9 Hb_000317_070 0.0841076864 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
10 Hb_001221_310 0.0841484021 - - sec61 gamma subunit, putative [Ricinus communis]
11 Hb_006915_040 0.0866076109 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
12 Hb_002316_120 0.0878872298 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
13 Hb_007304_070 0.0892134211 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
14 Hb_072922_020 0.0906293812 - - SNARE-like superfamily protein [Theobroma cacao]
15 Hb_120823_010 0.0910312105 - - -
16 Hb_012539_020 0.0918002025 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
17 Hb_003053_030 0.092224693 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
18 Hb_007441_300 0.0922290483 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000042_200 0.0929929524 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
20 Hb_001882_070 0.0936969868 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]

Gene co-expression network

sample Hb_001155_040 Hb_001155_040 Hb_000087_130 Hb_000087_130 Hb_001155_040--Hb_000087_130 Hb_006452_040 Hb_006452_040 Hb_001155_040--Hb_006452_040 Hb_005463_140 Hb_005463_140 Hb_001155_040--Hb_005463_140 Hb_000062_390 Hb_000062_390 Hb_001155_040--Hb_000062_390 Hb_007317_160 Hb_007317_160 Hb_001155_040--Hb_007317_160 Hb_000389_080 Hb_000389_080 Hb_001155_040--Hb_000389_080 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120 Hb_003018_050 Hb_003018_050 Hb_006452_040--Hb_003018_050 Hb_002631_020 Hb_002631_020 Hb_006452_040--Hb_002631_020 Hb_006452_040--Hb_007317_160 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_006452_040--Hb_005463_140 Hb_005463_140--Hb_072922_020 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280 Hb_001634_040 Hb_001634_040 Hb_000062_390--Hb_001634_040 Hb_002588_010 Hb_002588_010 Hb_000062_390--Hb_002588_010 Hb_019516_100 Hb_019516_100 Hb_000062_390--Hb_019516_100 Hb_000093_110 Hb_000093_110 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070 Hb_007317_160--Hb_005463_140 Hb_012539_020 Hb_012539_020 Hb_007317_160--Hb_012539_020 Hb_000012_100 Hb_000012_100 Hb_007317_160--Hb_000012_100 Hb_005663_120 Hb_005663_120 Hb_007317_160--Hb_005663_120 Hb_000389_080--Hb_012539_020 Hb_001780_050 Hb_001780_050 Hb_000389_080--Hb_001780_050 Hb_000163_130 Hb_000163_130 Hb_000389_080--Hb_000163_130 Hb_000905_180 Hb_000905_180 Hb_000389_080--Hb_000905_180 Hb_003053_030 Hb_003053_030 Hb_000389_080--Hb_003053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
148.304 39.6524 110.28 229.552 80.298 135.888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
498.283 713.526 287.207 161.472 111.508

CAGE analysis