Hb_001157_010

Information

Type -
Description -
Location Contig1157: 1554-11161
Sequence    

Annotation

kegg
ID rcu:RCOM_0663340
description deoxyhypusine synthase, putative (EC:2.5.1.45)
nr
ID XP_002530187.1
description deoxyhypusine synthase, putative [Ricinus communis]
swissprot
ID Q6RJS2
description Deoxyhypusine synthase OS=Brassica napus GN=DHS PE=2 SV=1
trembl
ID B9SW18
description Deoxyhypusine synthase, putative OS=Ricinus communis GN=RCOM_0663340 PE=4 SV=1
Gene Ontology
ID GO:0050514
description deoxyhypusine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04689: 1520-3047 , PASA_asmbl_04691: 3108-5131 , PASA_asmbl_04692: 6310-10930 , PASA_asmbl_04693: 10147-10930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_010 0.0 - - deoxyhypusine synthase, putative [Ricinus communis]
2 Hb_001314_040 0.0703633366 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
3 Hb_003326_020 0.0793257055 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
4 Hb_002876_120 0.0831198144 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
5 Hb_000239_030 0.0839460176 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
6 Hb_006569_100 0.0842271533 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
7 Hb_000530_070 0.0899490192 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
8 Hb_000012_100 0.0935460639 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
9 Hb_032969_030 0.0940796378 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_020419_020 0.0953857308 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_000802_100 0.0961882769 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
12 Hb_003185_050 0.0974440364 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
13 Hb_002374_390 0.0978256325 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
14 Hb_000069_550 0.0983554495 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
15 Hb_001135_210 0.0993863429 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
16 Hb_003579_030 0.0995516198 - - phosphatase 2C family protein [Populus trichocarpa]
17 Hb_000181_300 0.1009896226 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
18 Hb_000193_120 0.102257276 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
19 Hb_000115_230 0.1029105496 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_003581_220 0.1036079187 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001157_010 Hb_001157_010 Hb_001314_040 Hb_001314_040 Hb_001157_010--Hb_001314_040 Hb_003326_020 Hb_003326_020 Hb_001157_010--Hb_003326_020 Hb_002876_120 Hb_002876_120 Hb_001157_010--Hb_002876_120 Hb_000239_030 Hb_000239_030 Hb_001157_010--Hb_000239_030 Hb_006569_100 Hb_006569_100 Hb_001157_010--Hb_006569_100 Hb_000530_070 Hb_000530_070 Hb_001157_010--Hb_000530_070 Hb_001314_040--Hb_006569_100 Hb_020419_020 Hb_020419_020 Hb_001314_040--Hb_020419_020 Hb_000802_100 Hb_000802_100 Hb_001314_040--Hb_000802_100 Hb_000224_140 Hb_000224_140 Hb_001314_040--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_001314_040--Hb_068056_030 Hb_003185_050 Hb_003185_050 Hb_003326_020--Hb_003185_050 Hb_000567_410 Hb_000567_410 Hb_003326_020--Hb_000567_410 Hb_001076_020 Hb_001076_020 Hb_003326_020--Hb_001076_020 Hb_000193_120 Hb_000193_120 Hb_003326_020--Hb_000193_120 Hb_003326_020--Hb_000239_030 Hb_007594_120 Hb_007594_120 Hb_002876_120--Hb_007594_120 Hb_003579_030 Hb_003579_030 Hb_002876_120--Hb_003579_030 Hb_020301_040 Hb_020301_040 Hb_002876_120--Hb_020301_040 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100 Hb_002999_050 Hb_002999_050 Hb_002876_120--Hb_002999_050 Hb_000115_230 Hb_000115_230 Hb_000239_030--Hb_000115_230 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000236_150 Hb_000236_150 Hb_000239_030--Hb_000236_150 Hb_002217_450 Hb_002217_450 Hb_000239_030--Hb_002217_450 Hb_006569_100--Hb_020419_020 Hb_006569_100--Hb_068056_030 Hb_001519_030 Hb_001519_030 Hb_006569_100--Hb_001519_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_001008_090 Hb_001008_090 Hb_006569_100--Hb_001008_090 Hb_000530_070--Hb_001314_040 Hb_003581_220 Hb_003581_220 Hb_000530_070--Hb_003581_220 Hb_000530_070--Hb_000802_100 Hb_002026_120 Hb_002026_120 Hb_000530_070--Hb_002026_120 Hb_000530_070--Hb_001076_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.7742 3.49652 6.3198 9.23493 6.91856 6.40131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0088 42.8509 34.6344 7.93025 4.51711

CAGE analysis