Hb_001157_020

Information

Type -
Description -
Location Contig1157: 13756-20135
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10515g
description POPTRDRAFT_726687; hypothetical protein
nr
ID XP_012092042.1
description PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
swissprot
ID P64956
description Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2253c PE=3 SV=1
trembl
ID A0A067KCS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07513 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rnase h family isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04694: 17358-19432 , PASA_asmbl_04695: 18934-19456 , PASA_asmbl_04696: 13833-19428 , PASA_asmbl_04697: 19858-20481
cDNA
(Sanger)
(ID:Location)		 014_N05.ab1: 18945-19454 , 035_E23.ab1: 18945-19454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_020 0.0 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
2 Hb_028227_020 0.0489420843 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
3 Hb_012725_050 0.057271823 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
4 Hb_001105_030 0.05973642 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
5 Hb_001821_010 0.0650399405 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
6 Hb_001140_370 0.0654750666 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
7 Hb_000815_320 0.0659121298 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
8 Hb_001662_150 0.0689059573 - - Scaffold attachment factor B1 [Medicago truncatula]
9 Hb_009694_010 0.0723478187 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000059_370 0.0752499011 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
11 Hb_001662_070 0.0767429988 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
12 Hb_001195_280 0.0769725839 - - PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri]
13 Hb_001936_080 0.0775646192 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
14 Hb_010222_020 0.0784766964 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
15 Hb_000787_050 0.0795725453 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
16 Hb_007163_070 0.0801644204 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
17 Hb_005697_060 0.0811790167 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
18 Hb_005306_170 0.0812921727 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
19 Hb_002534_150 0.082166302 - - catalytic, putative [Ricinus communis]
20 Hb_006059_050 0.083303478 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_020 Hb_001157_020 Hb_028227_020 Hb_028227_020 Hb_001157_020--Hb_028227_020 Hb_012725_050 Hb_012725_050 Hb_001157_020--Hb_012725_050 Hb_001105_030 Hb_001105_030 Hb_001157_020--Hb_001105_030 Hb_001821_010 Hb_001821_010 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_000815_320 Hb_000815_320 Hb_001157_020--Hb_000815_320 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_028227_020--Hb_005697_060 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_012725_050--Hb_001105_030 Hb_012725_050--Hb_001821_010 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001105_030--Hb_001821_010 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_001105_030--Hb_000815_320 Hb_001821_010--Hb_000815_320 Hb_000056_200 Hb_000056_200 Hb_001821_010--Hb_000056_200 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040 Hb_024071_020 Hb_024071_020 Hb_001140_370--Hb_024071_020 Hb_001016_030 Hb_001016_030 Hb_001140_370--Hb_001016_030 Hb_003918_010 Hb_003918_010 Hb_001140_370--Hb_003918_010 Hb_006059_050 Hb_006059_050 Hb_001140_370--Hb_006059_050 Hb_172426_040 Hb_172426_040 Hb_001140_370--Hb_172426_040 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.29 5.03845 10.4812 9.25445 13.078 13.6752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9087 20.0523 11.1291 7.10094 8.9764

CAGE analysis