Hb_001157_040

Information

Type -
Description -
Location Contig1157: 23872-32535
Sequence    

Annotation

kegg
ID rcu:RCOM_0768750
description casein kinase, putative
nr
ID XP_002531638.1
description casein kinase, putative [Ricinus communis]
swissprot
ID P40234
description Casein kinase I homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cki2 PE=1 SV=2
trembl
ID B9T069
description Casein kinase, putative OS=Ricinus communis GN=RCOM_0768750 PE=3 SV=1
Gene Ontology
ID GO:0004674
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04699: 27568-32448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_040 0.0 - - casein kinase, putative [Ricinus communis]
2 Hb_000866_220 0.0446800004 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
3 Hb_001838_060 0.0478489853 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
4 Hb_000563_320 0.0503271579 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
5 Hb_000016_250 0.0528244791 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
6 Hb_000331_670 0.0604661192 - - PREDICTED: protein tipD [Jatropha curcas]
7 Hb_000538_270 0.0617215972 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
8 Hb_001242_060 0.0618227356 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
9 Hb_005779_060 0.0625662585 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
10 Hb_002110_150 0.0632984921 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
11 Hb_031527_040 0.0635618139 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
12 Hb_000465_460 0.0640581673 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
13 Hb_003211_020 0.0655409403 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
14 Hb_015934_040 0.0661784959 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
15 Hb_000757_060 0.068350128 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
16 Hb_008725_260 0.069013635 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
17 Hb_002046_180 0.0693418487 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
18 Hb_021576_110 0.0725979763 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
19 Hb_000096_070 0.0728988754 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
20 Hb_007416_180 0.0739906299 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_040 Hb_001157_040 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_001838_060 Hb_001838_060 Hb_001157_040--Hb_001838_060 Hb_000563_320 Hb_000563_320 Hb_001157_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_001157_040--Hb_000016_250 Hb_000331_670 Hb_000331_670 Hb_001157_040--Hb_000331_670 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270 Hb_000056_240 Hb_000056_240 Hb_000866_220--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_000866_220--Hb_008725_260 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_002046_180 Hb_002046_180 Hb_000866_220--Hb_002046_180 Hb_000189_560 Hb_000189_560 Hb_000866_220--Hb_000189_560 Hb_001329_160 Hb_001329_160 Hb_001838_060--Hb_001329_160 Hb_000976_310 Hb_000976_310 Hb_001838_060--Hb_000976_310 Hb_007163_120 Hb_007163_120 Hb_001838_060--Hb_007163_120 Hb_001818_070 Hb_001818_070 Hb_001838_060--Hb_001818_070 Hb_001838_060--Hb_000331_670 Hb_000563_320--Hb_000016_250 Hb_031527_040 Hb_031527_040 Hb_000563_320--Hb_031527_040 Hb_005779_060 Hb_005779_060 Hb_000563_320--Hb_005779_060 Hb_001242_060 Hb_001242_060 Hb_000563_320--Hb_001242_060 Hb_011995_010 Hb_011995_010 Hb_000563_320--Hb_011995_010 Hb_000016_250--Hb_005779_060 Hb_000096_070 Hb_000096_070 Hb_000016_250--Hb_000096_070 Hb_000016_250--Hb_001242_060 Hb_000016_250--Hb_031527_040 Hb_015934_040 Hb_015934_040 Hb_000331_670--Hb_015934_040 Hb_003211_020 Hb_003211_020 Hb_000331_670--Hb_003211_020 Hb_000331_670--Hb_007163_120 Hb_013399_100 Hb_013399_100 Hb_000331_670--Hb_013399_100 Hb_021576_110 Hb_021576_110 Hb_000331_670--Hb_021576_110 Hb_007416_180 Hb_007416_180 Hb_000538_270--Hb_007416_180 Hb_000757_060 Hb_000757_060 Hb_000538_270--Hb_000757_060 Hb_002686_030 Hb_002686_030 Hb_000538_270--Hb_002686_030 Hb_000289_060 Hb_000289_060 Hb_000538_270--Hb_000289_060 Hb_001005_190 Hb_001005_190 Hb_000538_270--Hb_001005_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.767 64.5742 38.3981 35.767 49.5962 57.9625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.3277 81.1403 68.1836 42.2108 33.9834

CAGE analysis