Hb_001157_050

Information

Type -
Description -
Location Contig1157: 34008-41347
Sequence    

Annotation

kegg
ID rcu:RCOM_0768880
description cation efflux protein/ zinc transporter, putative
nr
ID XP_002531641.1
description cation efflux protein/ zinc transporter, putative [Ricinus communis]
swissprot
ID Q10PP8
description Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1
trembl
ID B9T072
description Cation efflux protein/ zinc transporter, putative OS=Ricinus communis GN=RCOM_0768880 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04702: 33987-37478
cDNA
(Sanger)
(ID:Location)		 007_J03.ab1: 34894-37478

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_050 0.0 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
2 Hb_015048_020 0.0700669577 - - PREDICTED: myb-like protein D [Jatropha curcas]
3 Hb_007632_160 0.0711025517 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001366_290 0.075040058 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
5 Hb_000003_750 0.0772291456 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
6 Hb_000996_070 0.0775351705 - - unnamed protein product [Vitis vinifera]
7 Hb_128196_010 0.0830359453 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001159_090 0.0835797116 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
9 Hb_000032_420 0.0895794052 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
10 Hb_000086_470 0.0917916739 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
11 Hb_070498_010 0.0941001267 - - receptor kinase, putative [Ricinus communis]
12 Hb_002301_400 0.0951243749 - - structural constituent of cell wall, putative [Ricinus communis]
13 Hb_000112_080 0.0954852319 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
14 Hb_000120_340 0.0954896674 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_010449_010 0.0957212443 - - l-ascorbate oxidase, putative [Ricinus communis]
16 Hb_000627_040 0.0965346309 - - leucine-rich repeat protein, putative [Ricinus communis]
17 Hb_005675_050 0.0983896358 - - alpha-glucosidase, putative [Ricinus communis]
18 Hb_121313_010 0.099580376 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
19 Hb_003750_120 0.0997431819 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
20 Hb_002490_060 0.1006948152 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_050 Hb_001157_050 Hb_015048_020 Hb_015048_020 Hb_001157_050--Hb_015048_020 Hb_007632_160 Hb_007632_160 Hb_001157_050--Hb_007632_160 Hb_001366_290 Hb_001366_290 Hb_001157_050--Hb_001366_290 Hb_000003_750 Hb_000003_750 Hb_001157_050--Hb_000003_750 Hb_000996_070 Hb_000996_070 Hb_001157_050--Hb_000996_070 Hb_128196_010 Hb_128196_010 Hb_001157_050--Hb_128196_010 Hb_000032_420 Hb_000032_420 Hb_015048_020--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_015048_020--Hb_010449_010 Hb_001117_050 Hb_001117_050 Hb_015048_020--Hb_001117_050 Hb_000112_080 Hb_000112_080 Hb_015048_020--Hb_000112_080 Hb_015048_020--Hb_000003_750 Hb_000418_110 Hb_000418_110 Hb_007632_160--Hb_000418_110 Hb_000120_340 Hb_000120_340 Hb_007632_160--Hb_000120_340 Hb_000086_470 Hb_000086_470 Hb_007632_160--Hb_000086_470 Hb_004122_010 Hb_004122_010 Hb_007632_160--Hb_004122_010 Hb_005675_050 Hb_005675_050 Hb_007632_160--Hb_005675_050 Hb_002490_060 Hb_002490_060 Hb_001366_290--Hb_002490_060 Hb_039075_020 Hb_039075_020 Hb_001366_290--Hb_039075_020 Hb_000627_040 Hb_000627_040 Hb_001366_290--Hb_000627_040 Hb_001366_290--Hb_015048_020 Hb_007290_050 Hb_007290_050 Hb_001366_290--Hb_007290_050 Hb_011918_070 Hb_011918_070 Hb_000003_750--Hb_011918_070 Hb_003750_120 Hb_003750_120 Hb_000003_750--Hb_003750_120 Hb_005496_040 Hb_005496_040 Hb_000003_750--Hb_005496_040 Hb_070498_010 Hb_070498_010 Hb_000003_750--Hb_070498_010 Hb_000996_070--Hb_010449_010 Hb_000441_130 Hb_000441_130 Hb_000996_070--Hb_000441_130 Hb_000996_070--Hb_000032_420 Hb_006196_030 Hb_006196_030 Hb_000996_070--Hb_006196_030 Hb_001794_040 Hb_001794_040 Hb_000996_070--Hb_001794_040 Hb_128196_010--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_128196_010--Hb_002301_400 Hb_012404_020 Hb_012404_020 Hb_128196_010--Hb_012404_020 Hb_001221_060 Hb_001221_060 Hb_128196_010--Hb_001221_060 Hb_005568_020 Hb_005568_020 Hb_128196_010--Hb_005568_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0129962 3.22505 19.0281 18.5897 0.0495314 0.01292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0591873 0 0.0876399 2.22905 8.10106

CAGE analysis