Hb_001157_110

Information

Type -
Description -
Location Contig1157: 70073-74373
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04800g
description POPTRDRAFT_829297; 10-formyltetrahydrofolate synthetase family protein
nr
ID XP_011037957.1
description PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
swissprot
ID P28723
description Formate--tetrahydrofolate ligase OS=Spinacia oleracea PE=1 SV=3
trembl
ID B9GLK3
description 10-formyltetrahydrofolate synthetase family protein OS=Populus trichocarpa GN=POPTR_0001s04800g PE=3 SV=1
Gene Ontology
ID GO:0004329
description formate--tetrahydrofolate ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04711: 75355-76055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_110 0.0 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
2 Hb_000497_110 0.0836226292 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
3 Hb_000096_160 0.0857167288 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
4 Hb_019654_030 0.0923213999 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
5 Hb_002631_080 0.0941267956 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
6 Hb_000228_110 0.0959666891 - - unnamed protein product [Vitis vinifera]
7 Hb_001085_240 0.0965198669 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
8 Hb_003633_050 0.1039458943 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
9 Hb_000094_210 0.1128330171 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
10 Hb_000103_270 0.1137536211 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
11 Hb_000095_080 0.1140079108 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
12 Hb_001246_030 0.1157929125 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
13 Hb_002000_080 0.1176430311 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
14 Hb_002400_410 0.1179169116 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
15 Hb_019053_030 0.1185539974 - - PREDICTED: sulfite oxidase [Jatropha curcas]
16 Hb_098315_080 0.1187374597 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
17 Hb_006277_110 0.1193530751 - - protein with unknown function [Ricinus communis]
18 Hb_000181_050 0.1202054006 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
19 Hb_028227_070 0.1214551775 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
20 Hb_002311_340 0.1220513316 - - phospholipase d zeta, putative [Ricinus communis]

Gene co-expression network

sample Hb_001157_110 Hb_001157_110 Hb_000497_110 Hb_000497_110 Hb_001157_110--Hb_000497_110 Hb_000096_160 Hb_000096_160 Hb_001157_110--Hb_000096_160 Hb_019654_030 Hb_019654_030 Hb_001157_110--Hb_019654_030 Hb_002631_080 Hb_002631_080 Hb_001157_110--Hb_002631_080 Hb_000228_110 Hb_000228_110 Hb_001157_110--Hb_000228_110 Hb_001085_240 Hb_001085_240 Hb_001157_110--Hb_001085_240 Hb_011671_180 Hb_011671_180 Hb_000497_110--Hb_011671_180 Hb_002000_080 Hb_002000_080 Hb_000497_110--Hb_002000_080 Hb_006642_040 Hb_006642_040 Hb_000497_110--Hb_006642_040 Hb_001009_170 Hb_001009_170 Hb_000497_110--Hb_001009_170 Hb_004837_130 Hb_004837_130 Hb_000497_110--Hb_004837_130 Hb_003633_050 Hb_003633_050 Hb_000096_160--Hb_003633_050 Hb_000096_160--Hb_001085_240 Hb_005914_170 Hb_005914_170 Hb_000096_160--Hb_005914_170 Hb_000096_160--Hb_000228_110 Hb_000103_270 Hb_000103_270 Hb_000096_160--Hb_000103_270 Hb_009193_030 Hb_009193_030 Hb_019654_030--Hb_009193_030 Hb_000363_360 Hb_000363_360 Hb_019654_030--Hb_000363_360 Hb_005306_180 Hb_005306_180 Hb_019654_030--Hb_005306_180 Hb_002284_230 Hb_002284_230 Hb_019654_030--Hb_002284_230 Hb_019654_030--Hb_003633_050 Hb_000291_080 Hb_000291_080 Hb_019654_030--Hb_000291_080 Hb_002631_080--Hb_001085_240 Hb_002631_080--Hb_003633_050 Hb_002631_080--Hb_000096_160 Hb_000094_210 Hb_000094_210 Hb_002631_080--Hb_000094_210 Hb_002675_140 Hb_002675_140 Hb_002631_080--Hb_002675_140 Hb_001348_020 Hb_001348_020 Hb_000228_110--Hb_001348_020 Hb_019053_030 Hb_019053_030 Hb_000228_110--Hb_019053_030 Hb_000228_110--Hb_001085_240 Hb_002889_030 Hb_002889_030 Hb_000228_110--Hb_002889_030 Hb_000228_110--Hb_003633_050 Hb_001085_240--Hb_003633_050 Hb_001085_240--Hb_000094_210 Hb_001085_240--Hb_002675_140 Hb_001085_240--Hb_005914_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26389 0.830763 0.540202 2.23394 0.844072 1.82843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24548 1.92742 2.6394 4.13245 1.62158

CAGE analysis