Hb_001157_120

Information

Type -
Description -
Location Contig1157: 75459-76052
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21450g
description hypothetical protein
nr
ID XP_012064616.1
description PREDICTED: dirigent protein 19-like [Jatropha curcas]
swissprot
ID Q9C523
description Dirigent protein 19 OS=Arabidopsis thaliana GN=DIR19 PE=2 SV=1
trembl
ID A0A067L7B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04711: 75355-76055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_120 0.0 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
2 Hb_000243_240 0.0440107164 - - cytochrome P450 family protein [Populus trichocarpa]
3 Hb_003528_090 0.0628469364 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
4 Hb_003060_020 0.0672618372 - - serine carboxypeptidase, putative [Ricinus communis]
5 Hb_000816_170 0.0740656847 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
6 Hb_005396_020 0.0778437365 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
7 Hb_000244_290 0.0787043999 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
8 Hb_001141_430 0.0811125171 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
9 Hb_000816_090 0.0812080917 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
10 Hb_159791_010 0.0840655266 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
11 Hb_000012_340 0.0842489829 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
12 Hb_000628_070 0.0857453853 - - -
13 Hb_001232_170 0.0867133479 - - sulfate transporter, putative [Ricinus communis]
14 Hb_011344_110 0.0873512489 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
15 Hb_001343_060 0.0913048092 - - Cytochrome P450 [Theobroma cacao]
16 Hb_006889_010 0.092120721 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
17 Hb_000327_350 0.0925463116 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
18 Hb_006816_060 0.0994017462 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
19 Hb_006570_170 0.1015107856 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
20 Hb_014881_020 0.1027389654 - - Protein P21, putative [Ricinus communis]

Gene co-expression network

sample Hb_001157_120 Hb_001157_120 Hb_000243_240 Hb_000243_240 Hb_001157_120--Hb_000243_240 Hb_003528_090 Hb_003528_090 Hb_001157_120--Hb_003528_090 Hb_003060_020 Hb_003060_020 Hb_001157_120--Hb_003060_020 Hb_000816_170 Hb_000816_170 Hb_001157_120--Hb_000816_170 Hb_005396_020 Hb_005396_020 Hb_001157_120--Hb_005396_020 Hb_000244_290 Hb_000244_290 Hb_001157_120--Hb_000244_290 Hb_000243_240--Hb_000816_170 Hb_000243_240--Hb_000244_290 Hb_001141_430 Hb_001141_430 Hb_000243_240--Hb_001141_430 Hb_001343_060 Hb_001343_060 Hb_000243_240--Hb_001343_060 Hb_011344_110 Hb_011344_110 Hb_000243_240--Hb_011344_110 Hb_003528_090--Hb_003060_020 Hb_000816_090 Hb_000816_090 Hb_003528_090--Hb_000816_090 Hb_001401_130 Hb_001401_130 Hb_003528_090--Hb_001401_130 Hb_003528_090--Hb_005396_020 Hb_000327_350 Hb_000327_350 Hb_003528_090--Hb_000327_350 Hb_003060_020--Hb_000816_090 Hb_003060_020--Hb_000327_350 Hb_003060_020--Hb_005396_020 Hb_103468_010 Hb_103468_010 Hb_003060_020--Hb_103468_010 Hb_001634_050 Hb_001634_050 Hb_003060_020--Hb_001634_050 Hb_000358_070 Hb_000358_070 Hb_000816_170--Hb_000358_070 Hb_000012_340 Hb_000012_340 Hb_000816_170--Hb_000012_340 Hb_001232_170 Hb_001232_170 Hb_000816_170--Hb_001232_170 Hb_000816_170--Hb_001343_060 Hb_000201_060 Hb_000201_060 Hb_000816_170--Hb_000201_060 Hb_005396_020--Hb_001634_050 Hb_005396_020--Hb_000816_090 Hb_012180_070 Hb_012180_070 Hb_005396_020--Hb_012180_070 Hb_006570_170 Hb_006570_170 Hb_005396_020--Hb_006570_170 Hb_000244_290--Hb_011344_110 Hb_000628_070 Hb_000628_070 Hb_000244_290--Hb_000628_070 Hb_000244_290--Hb_000327_350 Hb_000244_290--Hb_000816_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0441297 8.16986 8.12449 256.806 0.219116 0.0662778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.69385 20.5444

CAGE analysis