Hb_001157_150

Information

Type -
Description -
Location Contig1157: 96360-97304
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21430g
description POPTRDRAFT_555238; hypothetical protein
nr
ID XP_012093327.1
description PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LAU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04712: 96252-96621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_150 0.0 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
2 Hb_000236_360 0.0912747153 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
3 Hb_000380_040 0.0929061405 - - bel1 homeotic protein, putative [Ricinus communis]
4 Hb_009083_080 0.1067559158 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000077_470 0.1147070777 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
6 Hb_002003_020 0.1193036344 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
7 Hb_000334_250 0.120782508 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_186298_010 0.1251015762 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_004109_300 0.1258518078 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
10 Hb_033006_040 0.1269380825 - - sulfate transporter, putative [Ricinus communis]
11 Hb_000300_570 0.1324527009 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
12 Hb_000185_060 0.134144243 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
13 Hb_004136_050 0.1342886409 - - -
14 Hb_000265_010 0.1346520195 - - amino acid transporter, putative [Ricinus communis]
15 Hb_181092_010 0.1379596161 - - unnamed protein product [Vitis vinifera]
16 Hb_005218_070 0.1387736105 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
17 Hb_001953_130 0.1394725365 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
18 Hb_005663_050 0.1404475359 - - amino acid transporter, putative [Ricinus communis]
19 Hb_047163_010 0.1408130441 - - PREDICTED: periaxin-like [Populus euphratica]
20 Hb_002917_020 0.1432800134 - - predicted protein [Arabidopsis lyrata subsp. lyrata]

Gene co-expression network

sample Hb_001157_150 Hb_001157_150 Hb_000236_360 Hb_000236_360 Hb_001157_150--Hb_000236_360 Hb_000380_040 Hb_000380_040 Hb_001157_150--Hb_000380_040 Hb_009083_080 Hb_009083_080 Hb_001157_150--Hb_009083_080 Hb_000077_470 Hb_000077_470 Hb_001157_150--Hb_000077_470 Hb_002003_020 Hb_002003_020 Hb_001157_150--Hb_002003_020 Hb_000334_250 Hb_000334_250 Hb_001157_150--Hb_000334_250 Hb_004109_300 Hb_004109_300 Hb_000236_360--Hb_004109_300 Hb_000236_360--Hb_000380_040 Hb_047163_010 Hb_047163_010 Hb_000236_360--Hb_047163_010 Hb_125876_010 Hb_125876_010 Hb_000236_360--Hb_125876_010 Hb_181092_010 Hb_181092_010 Hb_000236_360--Hb_181092_010 Hb_000380_040--Hb_009083_080 Hb_000380_040--Hb_181092_010 Hb_000185_060 Hb_000185_060 Hb_000380_040--Hb_000185_060 Hb_033006_040 Hb_033006_040 Hb_000380_040--Hb_033006_040 Hb_004656_020 Hb_004656_020 Hb_009083_080--Hb_004656_020 Hb_003253_060 Hb_003253_060 Hb_009083_080--Hb_003253_060 Hb_006418_010 Hb_006418_010 Hb_009083_080--Hb_006418_010 Hb_009083_080--Hb_181092_010 Hb_009083_080--Hb_000077_470 Hb_000077_470--Hb_003253_060 Hb_001021_140 Hb_001021_140 Hb_000077_470--Hb_001021_140 Hb_005081_080 Hb_005081_080 Hb_000077_470--Hb_005081_080 Hb_000077_470--Hb_006418_010 Hb_017866_020 Hb_017866_020 Hb_002003_020--Hb_017866_020 Hb_019229_020 Hb_019229_020 Hb_002003_020--Hb_019229_020 Hb_004136_050 Hb_004136_050 Hb_002003_020--Hb_004136_050 Hb_000077_460 Hb_000077_460 Hb_002003_020--Hb_000077_460 Hb_001638_110 Hb_001638_110 Hb_002003_020--Hb_001638_110 Hb_001283_010 Hb_001283_010 Hb_002003_020--Hb_001283_010 Hb_009515_010 Hb_009515_010 Hb_000334_250--Hb_009515_010 Hb_002204_030 Hb_002204_030 Hb_000334_250--Hb_002204_030 Hb_000302_060 Hb_000302_060 Hb_000334_250--Hb_000302_060 Hb_005218_070 Hb_005218_070 Hb_000334_250--Hb_005218_070 Hb_000472_030 Hb_000472_030 Hb_000334_250--Hb_000472_030 Hb_005228_170 Hb_005228_170 Hb_000334_250--Hb_005228_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.85408 0.0554387 0.975485 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0427852 0 6.49592 0

CAGE analysis