Hb_001157_160

Information

Type -
Description -
Location Contig1157: 106036-120675
Sequence    

Annotation

kegg
ID rcu:RCOM_1455450
description Ubiquitin-protein ligase bre-1, putative
nr
ID XP_012093329.1
description PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9C895
description E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=2 SV=2
trembl
ID A0A067LJA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19211 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase bre1-like 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04713: 107220-107927 , PASA_asmbl_04714: 108136-120717 , PASA_asmbl_04715: 114967-115183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_160 0.0 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
2 Hb_000676_330 0.0669290834 - - protein with unknown function [Ricinus communis]
3 Hb_002411_110 0.0704994307 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
4 Hb_001925_060 0.0714523078 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
5 Hb_005542_140 0.0726380113 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
6 Hb_002805_210 0.0748830702 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
7 Hb_183510_020 0.0756478065 - - coated vesicle membrane protein, putative [Ricinus communis]
8 Hb_000795_040 0.0759036432 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
9 Hb_000473_110 0.0761270806 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
10 Hb_000614_210 0.0763997088 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
11 Hb_003835_070 0.0771350068 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
12 Hb_003528_050 0.0780494775 - - protein transporter, putative [Ricinus communis]
13 Hb_004079_060 0.0783029962 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
14 Hb_027506_010 0.0785676625 - - PREDICTED: cullin-4 [Jatropha curcas]
15 Hb_001720_040 0.0787371145 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001668_010 0.0790389748 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
17 Hb_188281_040 0.0797721943 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
18 Hb_027472_220 0.0802366468 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
19 Hb_001377_190 0.0804700525 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
20 Hb_000317_100 0.081383851 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_160 Hb_001157_160 Hb_000676_330 Hb_000676_330 Hb_001157_160--Hb_000676_330 Hb_002411_110 Hb_002411_110 Hb_001157_160--Hb_002411_110 Hb_001925_060 Hb_001925_060 Hb_001157_160--Hb_001925_060 Hb_005542_140 Hb_005542_140 Hb_001157_160--Hb_005542_140 Hb_002805_210 Hb_002805_210 Hb_001157_160--Hb_002805_210 Hb_183510_020 Hb_183510_020 Hb_001157_160--Hb_183510_020 Hb_000206_160 Hb_000206_160 Hb_000676_330--Hb_000206_160 Hb_002768_050 Hb_002768_050 Hb_000676_330--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000676_330--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000676_330--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000676_330--Hb_000868_120 Hb_027506_010 Hb_027506_010 Hb_000676_330--Hb_027506_010 Hb_002890_130 Hb_002890_130 Hb_002411_110--Hb_002890_130 Hb_002411_110--Hb_001925_060 Hb_008948_020 Hb_008948_020 Hb_002411_110--Hb_008948_020 Hb_000317_100 Hb_000317_100 Hb_002411_110--Hb_000317_100 Hb_011819_020 Hb_011819_020 Hb_002411_110--Hb_011819_020 Hb_033312_040 Hb_033312_040 Hb_002411_110--Hb_033312_040 Hb_003040_050 Hb_003040_050 Hb_001925_060--Hb_003040_050 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_011174_020 Hb_011174_020 Hb_001925_060--Hb_011174_020 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010 Hb_002805_210--Hb_011174_020 Hb_027472_220 Hb_027472_220 Hb_002805_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_002805_210--Hb_012244_020 Hb_000934_210 Hb_000934_210 Hb_002805_210--Hb_000934_210 Hb_123531_010 Hb_123531_010 Hb_002805_210--Hb_123531_010 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_000011_100 Hb_000011_100 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.39364 25.3119 15.8943 14.2487 15.9309 12.5955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3806 14.7661 11.9295 21.8823 20.6841

CAGE analysis