Hb_001157_190

Information

Type -
Description -
Location Contig1157: 135796-137133
Sequence    

Annotation

kegg
ID rcu:RCOM_1455590
description lipid binding protein, putative
nr
ID XP_012093337.1
description PREDICTED: protein YLS3 [Jatropha curcas]
swissprot
ID O64864
description Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1
trembl
ID A0A067LIC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19217 PE=4 SV=1
Gene Ontology
ID GO:0019752
description protein yls3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04722: 135907-137148 , PASA_asmbl_04724: 135907-149598
cDNA
(Sanger)
(ID:Location)		 017_F05.ab1: 136035-136909 , 036_A13.ab1: 135964-136935

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_190 0.0 - - PREDICTED: protein YLS3 [Jatropha curcas]
2 Hb_000696_030 0.0725776367 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
3 Hb_001195_740 0.0831033489 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
4 Hb_002918_120 0.1004666692 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001597_030 0.1055979985 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
6 Hb_005731_070 0.1104347222 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005839_030 0.1108138743 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
8 Hb_005766_010 0.1118231018 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_001638_150 0.1154281642 - - acyltransferase, putative [Ricinus communis]
10 Hb_021346_020 0.116033342 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
11 Hb_003656_090 0.1170466706 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
12 Hb_008175_050 0.1172572868 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
13 Hb_000834_220 0.1175815859 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
14 Hb_015001_030 0.1229843806 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
15 Hb_000594_160 0.1241324763 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
16 Hb_000011_370 0.1291537057 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
17 Hb_005144_080 0.129240528 - - Serine carboxypeptidase, putative [Ricinus communis]
18 Hb_001776_070 0.1294809114 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
19 Hb_005679_110 0.1297955311 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
20 Hb_027556_060 0.1330825276 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]

Gene co-expression network

sample Hb_001157_190 Hb_001157_190 Hb_000696_030 Hb_000696_030 Hb_001157_190--Hb_000696_030 Hb_001195_740 Hb_001195_740 Hb_001157_190--Hb_001195_740 Hb_002918_120 Hb_002918_120 Hb_001157_190--Hb_002918_120 Hb_001597_030 Hb_001597_030 Hb_001157_190--Hb_001597_030 Hb_005731_070 Hb_005731_070 Hb_001157_190--Hb_005731_070 Hb_005839_030 Hb_005839_030 Hb_001157_190--Hb_005839_030 Hb_001776_070 Hb_001776_070 Hb_000696_030--Hb_001776_070 Hb_005679_110 Hb_005679_110 Hb_000696_030--Hb_005679_110 Hb_000696_030--Hb_005839_030 Hb_000696_030--Hb_001195_740 Hb_005144_080 Hb_005144_080 Hb_000696_030--Hb_005144_080 Hb_008143_060 Hb_008143_060 Hb_001195_740--Hb_008143_060 Hb_001195_740--Hb_002918_120 Hb_001832_140 Hb_001832_140 Hb_001195_740--Hb_001832_140 Hb_000696_250 Hb_000696_250 Hb_001195_740--Hb_000696_250 Hb_004446_060 Hb_004446_060 Hb_002918_120--Hb_004446_060 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_005144_060 Hb_005144_060 Hb_002918_120--Hb_005144_060 Hb_001437_260 Hb_001437_260 Hb_002918_120--Hb_001437_260 Hb_021346_020 Hb_021346_020 Hb_002918_120--Hb_021346_020 Hb_001597_030--Hb_000834_220 Hb_000011_370 Hb_000011_370 Hb_001597_030--Hb_000011_370 Hb_000749_120 Hb_000749_120 Hb_001597_030--Hb_000749_120 Hb_003540_120 Hb_003540_120 Hb_001597_030--Hb_003540_120 Hb_001138_070 Hb_001138_070 Hb_001597_030--Hb_001138_070 Hb_005731_070--Hb_000011_370 Hb_007386_030 Hb_007386_030 Hb_005731_070--Hb_007386_030 Hb_007017_100 Hb_007017_100 Hb_005731_070--Hb_007017_100 Hb_000714_060 Hb_000714_060 Hb_005731_070--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080 Hb_000594_160 Hb_000594_160 Hb_005731_070--Hb_000594_160 Hb_002592_050 Hb_002592_050 Hb_005839_030--Hb_002592_050 Hb_005839_030--Hb_005144_080 Hb_011129_020 Hb_011129_020 Hb_005839_030--Hb_011129_020 Hb_004079_100 Hb_004079_100 Hb_005839_030--Hb_004079_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84888 20.4975 73.1882 79.5552 0.7996 0.596229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16955 0.126895 0.649326 66.5465 26.9256

CAGE analysis