Hb_001157_200

Information

Type -
Description -
Location Contig1157: 147659-153676
Sequence    

Annotation

kegg
ID tcc:TCM_040152
description Uncharacterized protein isoform 1
nr
ID XP_012086040.1
description PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
swissprot
ID Q9M015
description Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1
trembl
ID A0A067JTM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22853 PE=4 SV=1
Gene Ontology
ID GO:0005773
description PREDICTED: uncharacterized protein LOC105645131

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04723: 147719-149598 , PASA_asmbl_04724: 135907-149598 , PASA_asmbl_04725: 151832-169821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_200 0.0 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
2 Hb_132880_040 0.0597132556 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
3 Hb_003544_030 0.0760625334 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
4 Hb_007747_080 0.0784524651 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000984_170 0.0785100975 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
6 Hb_006452_120 0.0809416572 - - PREDICTED: protein FAM188A [Jatropha curcas]
7 Hb_005663_110 0.0860509361 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
8 Hb_004677_050 0.0886000468 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
9 Hb_001500_100 0.0933986451 - - conserved hypothetical protein [Ricinus communis]
10 Hb_016347_010 0.0948587382 - - protein transporter, putative [Ricinus communis]
11 Hb_000012_310 0.0969498192 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
12 Hb_002908_050 0.097318172 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
13 Hb_000237_050 0.0976298308 - - CP2 [Hevea brasiliensis]
14 Hb_146051_010 0.0978326642 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_010515_020 0.099198068 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
16 Hb_000327_250 0.1006337816 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
17 Hb_001014_210 0.1012220694 - - CYP51 [Hevea brasiliensis]
18 Hb_004450_070 0.1032231853 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
19 Hb_019280_010 0.1040879041 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
20 Hb_001642_070 0.1042762037 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_200 Hb_001157_200 Hb_132880_040 Hb_132880_040 Hb_001157_200--Hb_132880_040 Hb_003544_030 Hb_003544_030 Hb_001157_200--Hb_003544_030 Hb_007747_080 Hb_007747_080 Hb_001157_200--Hb_007747_080 Hb_000984_170 Hb_000984_170 Hb_001157_200--Hb_000984_170 Hb_006452_120 Hb_006452_120 Hb_001157_200--Hb_006452_120 Hb_005663_110 Hb_005663_110 Hb_001157_200--Hb_005663_110 Hb_000035_390 Hb_000035_390 Hb_132880_040--Hb_000035_390 Hb_004677_050 Hb_004677_050 Hb_132880_040--Hb_004677_050 Hb_000046_170 Hb_000046_170 Hb_132880_040--Hb_000046_170 Hb_132880_040--Hb_000984_170 Hb_132880_040--Hb_006452_120 Hb_000327_250 Hb_000327_250 Hb_003544_030--Hb_000327_250 Hb_003544_030--Hb_005663_110 Hb_001434_080 Hb_001434_080 Hb_003544_030--Hb_001434_080 Hb_016347_010 Hb_016347_010 Hb_003544_030--Hb_016347_010 Hb_003544_030--Hb_006452_120 Hb_017387_010 Hb_017387_010 Hb_003544_030--Hb_017387_010 Hb_005396_150 Hb_005396_150 Hb_007747_080--Hb_005396_150 Hb_007747_080--Hb_003544_030 Hb_007747_080--Hb_000984_170 Hb_112198_010 Hb_112198_010 Hb_007747_080--Hb_112198_010 Hb_119530_010 Hb_119530_010 Hb_007747_080--Hb_119530_010 Hb_000984_170--Hb_004677_050 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_000984_170--Hb_005663_110 Hb_000984_170--Hb_006452_120 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_000984_170--Hb_002908_050 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_006452_120--Hb_004030_080 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_005663_110--Hb_001434_080 Hb_005663_110--Hb_004677_050 Hb_005663_110--Hb_000327_250 Hb_039946_050 Hb_039946_050 Hb_005663_110--Hb_039946_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.3153 51.0478 20.6762 81.5166 26.7955 29.8354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.1457 33.2358 40.9475 74.6 47.2846

CAGE analysis