Hb_001157_240

Information

Type -
Description -
Location Contig1157: 181932-192251
Sequence    

Annotation

kegg
ID vvi:100250155
description DEAD-box ATP-dependent RNA helicase 37-like
nr
ID XP_012085032.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
swissprot
ID Q84W89
description DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2
trembl
ID A0A067JSK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21034 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 37-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04728: 181862-182008 , PASA_asmbl_04729: 182325-191512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_240 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
2 Hb_001999_290 0.0521859762 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
3 Hb_003943_110 0.0553660481 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
4 Hb_005736_020 0.0554805203 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
5 Hb_005582_040 0.0608999376 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
6 Hb_000640_040 0.0613518754 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
7 Hb_001008_120 0.0668069676 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
8 Hb_001417_030 0.0679437003 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
9 Hb_004374_110 0.0695659236 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
10 Hb_008959_010 0.0705272164 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000720_050 0.0713453436 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
12 Hb_001716_040 0.0716604919 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
13 Hb_001635_120 0.0722033887 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
14 Hb_000388_090 0.0737922772 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
15 Hb_001304_110 0.0738687987 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
16 Hb_004052_170 0.0739738111 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
17 Hb_002263_020 0.0751108993 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
18 Hb_005686_090 0.0752760641 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
19 Hb_000039_150 0.0776671647 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
20 Hb_004679_030 0.0780357607 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]

Gene co-expression network

sample Hb_001157_240 Hb_001157_240 Hb_001999_290 Hb_001999_290 Hb_001157_240--Hb_001999_290 Hb_003943_110 Hb_003943_110 Hb_001157_240--Hb_003943_110 Hb_005736_020 Hb_005736_020 Hb_001157_240--Hb_005736_020 Hb_005582_040 Hb_005582_040 Hb_001157_240--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001157_240--Hb_000640_040 Hb_001008_120 Hb_001008_120 Hb_001157_240--Hb_001008_120 Hb_000174_270 Hb_000174_270 Hb_001999_290--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060 Hb_062226_070 Hb_062226_070 Hb_001999_290--Hb_062226_070 Hb_001716_040 Hb_001716_040 Hb_003943_110--Hb_001716_040 Hb_003943_110--Hb_005582_040 Hb_027073_020 Hb_027073_020 Hb_003943_110--Hb_027073_020 Hb_001998_240 Hb_001998_240 Hb_003943_110--Hb_001998_240 Hb_008033_040 Hb_008033_040 Hb_003943_110--Hb_008033_040 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_005736_020--Hb_001004_060 Hb_005736_020--Hb_001008_120 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_001304_110 Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_005582_040--Hb_000640_040 Hb_005582_040--Hb_001716_040 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120 Hb_000640_040--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_000640_040--Hb_002542_110 Hb_010068_080 Hb_010068_080 Hb_000640_040--Hb_010068_080 Hb_000640_040--Hb_001304_110 Hb_028912_050 Hb_028912_050 Hb_001008_120--Hb_028912_050 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_001008_120--Hb_005686_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.64553 10.3596 7.67536 9.2549 7.98769 8.03983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.06154 8.47104 11.6541 11.3384 17.0486

CAGE analysis