Hb_001158_050

Information

Type -
Description -
Location Contig1158: 11567-15810
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_050 0.0 - - -
2 Hb_012794_010 0.1215514746 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
3 Hb_000260_810 0.1340262218 - - -
4 Hb_001080_280 0.1451010868 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
5 Hb_000817_030 0.1456371785 - - mak, putative [Ricinus communis]
6 Hb_121089_070 0.1457218401 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
7 Hb_001519_030 0.147025837 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
8 Hb_003687_150 0.1503777463 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
9 Hb_011537_110 0.1532951116 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
10 Hb_004678_050 0.1536103492 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
11 Hb_019516_080 0.1543114223 - - conserved hypothetical protein [Ricinus communis]
12 Hb_093458_050 0.1545728512 - - glutathione reductase [Hevea brasiliensis]
13 Hb_001307_090 0.1559960316 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
14 Hb_027625_010 0.1561184682 - - PREDICTED: protein sym-1-like [Jatropha curcas]
15 Hb_000300_220 0.1564195209 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
16 Hb_000069_550 0.1569018132 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
17 Hb_003732_010 0.1572735861 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
18 Hb_002016_100 0.1573037442 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
19 Hb_001427_230 0.1583654855 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002600_040 0.1586075816 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001158_050 Hb_001158_050 Hb_012794_010 Hb_012794_010 Hb_001158_050--Hb_012794_010 Hb_000260_810 Hb_000260_810 Hb_001158_050--Hb_000260_810 Hb_001080_280 Hb_001080_280 Hb_001158_050--Hb_001080_280 Hb_000817_030 Hb_000817_030 Hb_001158_050--Hb_000817_030 Hb_121089_070 Hb_121089_070 Hb_001158_050--Hb_121089_070 Hb_001519_030 Hb_001519_030 Hb_001158_050--Hb_001519_030 Hb_005092_060 Hb_005092_060 Hb_012794_010--Hb_005092_060 Hb_012794_010--Hb_000260_810 Hb_002422_070 Hb_002422_070 Hb_012794_010--Hb_002422_070 Hb_011537_110 Hb_011537_110 Hb_012794_010--Hb_011537_110 Hb_011457_090 Hb_011457_090 Hb_012794_010--Hb_011457_090 Hb_000696_310 Hb_000696_310 Hb_000260_810--Hb_000696_310 Hb_022181_020 Hb_022181_020 Hb_000260_810--Hb_022181_020 Hb_181600_010 Hb_181600_010 Hb_000260_810--Hb_181600_010 Hb_048476_050 Hb_048476_050 Hb_000260_810--Hb_048476_050 Hb_005183_120 Hb_005183_120 Hb_000260_810--Hb_005183_120 Hb_002301_230 Hb_002301_230 Hb_000260_810--Hb_002301_230 Hb_004705_120 Hb_004705_120 Hb_001080_280--Hb_004705_120 Hb_001080_280--Hb_001519_030 Hb_000635_150 Hb_000635_150 Hb_001080_280--Hb_000635_150 Hb_000123_170 Hb_000123_170 Hb_001080_280--Hb_000123_170 Hb_001105_070 Hb_001105_070 Hb_001080_280--Hb_001105_070 Hb_011953_020 Hb_011953_020 Hb_001080_280--Hb_011953_020 Hb_027625_010 Hb_027625_010 Hb_000817_030--Hb_027625_010 Hb_002742_090 Hb_002742_090 Hb_000817_030--Hb_002742_090 Hb_005463_140 Hb_005463_140 Hb_000817_030--Hb_005463_140 Hb_005883_100 Hb_005883_100 Hb_000817_030--Hb_005883_100 Hb_000817_030--Hb_001519_030 Hb_017948_010 Hb_017948_010 Hb_000817_030--Hb_017948_010 Hb_002097_060 Hb_002097_060 Hb_121089_070--Hb_002097_060 Hb_001006_180 Hb_001006_180 Hb_121089_070--Hb_001006_180 Hb_001687_040 Hb_001687_040 Hb_121089_070--Hb_001687_040 Hb_006573_220 Hb_006573_220 Hb_121089_070--Hb_006573_220 Hb_003053_030 Hb_003053_030 Hb_121089_070--Hb_003053_030 Hb_001135_080 Hb_001135_080 Hb_121089_070--Hb_001135_080 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208789 0.00823743 0.0304227 0.151616 0.0680036 0.118758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.408268 0.285544 0.338385 0.213013 0.150844

CAGE analysis