Hb_001158_120

Information

Type -
Description -
Location Contig1158: 71481-84841
Sequence    

Annotation

kegg
ID rcu:RCOM_1504950
description zinc finger protein, putative
nr
ID XP_012090643.1
description PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
swissprot
ID Q8BMD7
description MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2
trembl
ID A0A067JSS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04745: 71575-83637 , PASA_asmbl_04747: 83643-84139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_120 0.0 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
2 Hb_011381_070 0.0775808482 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
3 Hb_000366_050 0.080674697 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
4 Hb_001294_040 0.0932778186 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_002609_290 0.099867162 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
6 Hb_005539_100 0.1021903688 - - nucleoside transporter, putative [Ricinus communis]
7 Hb_007483_080 0.1033903233 - - hypothetical protein RCOM_0634810 [Ricinus communis]
8 Hb_000007_440 0.1066959105 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
9 Hb_002010_100 0.1155518482 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
10 Hb_014361_170 0.1275093614 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
11 Hb_001989_070 0.1290403298 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
12 Hb_002849_180 0.1302186628 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
13 Hb_005016_080 0.1369195159 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
14 Hb_000329_790 0.1375713231 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
15 Hb_002361_010 0.1378197455 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_132840_020 0.139859322 - - PREDICTED: protein LHY [Jatropha curcas]
17 Hb_001195_230 0.1449269844 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
18 Hb_010812_060 0.148971833 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
19 Hb_046109_010 0.149785794 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_054232_020 0.1499828268 - - Potassium channel SKOR, putative [Ricinus communis]

Gene co-expression network

sample Hb_001158_120 Hb_001158_120 Hb_011381_070 Hb_011381_070 Hb_001158_120--Hb_011381_070 Hb_000366_050 Hb_000366_050 Hb_001158_120--Hb_000366_050 Hb_001294_040 Hb_001294_040 Hb_001158_120--Hb_001294_040 Hb_002609_290 Hb_002609_290 Hb_001158_120--Hb_002609_290 Hb_005539_100 Hb_005539_100 Hb_001158_120--Hb_005539_100 Hb_007483_080 Hb_007483_080 Hb_001158_120--Hb_007483_080 Hb_011381_070--Hb_000366_050 Hb_000035_490 Hb_000035_490 Hb_011381_070--Hb_000035_490 Hb_011381_070--Hb_002609_290 Hb_011381_070--Hb_001294_040 Hb_132840_020 Hb_132840_020 Hb_011381_070--Hb_132840_020 Hb_000366_050--Hb_002609_290 Hb_000366_050--Hb_005539_100 Hb_000329_790 Hb_000329_790 Hb_000366_050--Hb_000329_790 Hb_000366_050--Hb_001294_040 Hb_014361_170 Hb_014361_170 Hb_001294_040--Hb_014361_170 Hb_000008_430 Hb_000008_430 Hb_001294_040--Hb_000008_430 Hb_001294_040--Hb_000035_490 Hb_010812_060 Hb_010812_060 Hb_002609_290--Hb_010812_060 Hb_002997_110 Hb_002997_110 Hb_002609_290--Hb_002997_110 Hb_001627_010 Hb_001627_010 Hb_002609_290--Hb_001627_010 Hb_172676_010 Hb_172676_010 Hb_005539_100--Hb_172676_010 Hb_005539_100--Hb_011381_070 Hb_002073_020 Hb_002073_020 Hb_005539_100--Hb_002073_020 Hb_000369_070 Hb_000369_070 Hb_005539_100--Hb_000369_070 Hb_002010_100 Hb_002010_100 Hb_007483_080--Hb_002010_100 Hb_000007_440 Hb_000007_440 Hb_007483_080--Hb_000007_440 Hb_002361_010 Hb_002361_010 Hb_007483_080--Hb_002361_010 Hb_002849_180 Hb_002849_180 Hb_007483_080--Hb_002849_180 Hb_000500_230 Hb_000500_230 Hb_007483_080--Hb_000500_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.851602 11.729 15.0687 6.52172 0.666513 0.739485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0670346 0.147706 0.101031 4.77261 6.76194

CAGE analysis