Hb_001158_130

Information

Type -
Description -
Location Contig1158: 89717-91008
Sequence    

Annotation

kegg
ID tcc:TCM_014700
description Tapetum determinant 1
nr
ID XP_012090642.1
description PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
swissprot
ID Q6TLJ2
description Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1
trembl
ID A0A067JIC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26409 PE=4 SV=1
Gene Ontology
ID GO:0001709
description protein tapetum determinant 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_130 0.0 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
2 Hb_189208_070 0.0535013181 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]
3 Hb_012098_100 0.0592791798 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000881_020 0.0604592578 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
5 Hb_000684_070 0.0618973562 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
6 Hb_000042_280 0.0658211617 - - chlorophyll A/B binding protein, putative [Ricinus communis]
7 Hb_001199_110 0.0774202828 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
8 Hb_000418_130 0.0808403293 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
9 Hb_006615_090 0.0815650624 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
10 Hb_001488_230 0.0826257661 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
11 Hb_005337_100 0.0846178928 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
12 Hb_009588_010 0.0868007254 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
13 Hb_001277_130 0.0931888045 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
14 Hb_166718_010 0.0938871381 - - heat-shock protein, putative [Ricinus communis]
15 Hb_147028_010 0.0953214319 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
16 Hb_008536_020 0.0985506495 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
17 Hb_002028_020 0.0992782182 - - acyltransferase, putative [Ricinus communis]
18 Hb_008847_050 0.0994163781 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004635_120 0.1004065698 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
20 Hb_000538_090 0.1005095322 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]

Gene co-expression network

sample Hb_001158_130 Hb_001158_130 Hb_189208_070 Hb_189208_070 Hb_001158_130--Hb_189208_070 Hb_012098_100 Hb_012098_100 Hb_001158_130--Hb_012098_100 Hb_000881_020 Hb_000881_020 Hb_001158_130--Hb_000881_020 Hb_000684_070 Hb_000684_070 Hb_001158_130--Hb_000684_070 Hb_000042_280 Hb_000042_280 Hb_001158_130--Hb_000042_280 Hb_001199_110 Hb_001199_110 Hb_001158_130--Hb_001199_110 Hb_189208_070--Hb_012098_100 Hb_000538_090 Hb_000538_090 Hb_189208_070--Hb_000538_090 Hb_189208_070--Hb_000881_020 Hb_009588_010 Hb_009588_010 Hb_189208_070--Hb_009588_010 Hb_012395_240 Hb_012395_240 Hb_189208_070--Hb_012395_240 Hb_012098_100--Hb_000881_020 Hb_012098_100--Hb_000042_280 Hb_001488_230 Hb_001488_230 Hb_012098_100--Hb_001488_230 Hb_012098_100--Hb_009588_010 Hb_000881_020--Hb_000042_280 Hb_004223_150 Hb_004223_150 Hb_000881_020--Hb_004223_150 Hb_004635_120 Hb_004635_120 Hb_000881_020--Hb_004635_120 Hb_002119_100 Hb_002119_100 Hb_000684_070--Hb_002119_100 Hb_000684_070--Hb_001199_110 Hb_007483_090 Hb_007483_090 Hb_000684_070--Hb_007483_090 Hb_000103_200 Hb_000103_200 Hb_000684_070--Hb_000103_200 Hb_000599_150 Hb_000599_150 Hb_000684_070--Hb_000599_150 Hb_000042_280--Hb_001488_230 Hb_000418_130 Hb_000418_130 Hb_000042_280--Hb_000418_130 Hb_002028_020 Hb_002028_020 Hb_000042_280--Hb_002028_020 Hb_000042_280--Hb_009588_010 Hb_149644_030 Hb_149644_030 Hb_000042_280--Hb_149644_030 Hb_006615_090 Hb_006615_090 Hb_001199_110--Hb_006615_090 Hb_002477_190 Hb_002477_190 Hb_001199_110--Hb_002477_190 Hb_000803_080 Hb_000803_080 Hb_001199_110--Hb_000803_080 Hb_001141_100 Hb_001141_100 Hb_001199_110--Hb_001141_100 Hb_147028_010 Hb_147028_010 Hb_001199_110--Hb_147028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0990143 1.06077 1.05468 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.38768

CAGE analysis