Hb_001158_140

Information

Type -
Description -
Location Contig1158: 95583-96514
Sequence    

Annotation

kegg
ID rcu:RCOM_0686430
description glutamate-1-semialdehyde 2,1-aminomutase, putative (EC:5.4.3.8)
nr
ID XP_002526835.1
description glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
swissprot
ID Q42522
description Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2
trembl
ID B9SLG6
description Glutamate-1-semialdehyde 2,1-aminomutase, putative OS=Ricinus communis GN=RCOM_0686430 PE=3 SV=1
Gene Ontology
ID GO:0008483
description glutamate-1-semialdehyde -aminomutase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04748: 94520-94845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_140 0.0 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
2 Hb_006816_140 0.0563481521 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
3 Hb_000200_050 0.0659518877 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_005488_010 0.0766458281 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003266_130 0.0772163294 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
6 Hb_004993_050 0.0806378215 - - -
7 Hb_003018_190 0.0858308397 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
8 Hb_016065_010 0.0865536208 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
9 Hb_004109_190 0.0887322727 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
10 Hb_009486_130 0.090757733 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
11 Hb_000614_230 0.0910943161 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
12 Hb_001811_020 0.0911665755 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000059_220 0.0934678462 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
14 Hb_002603_160 0.0948879668 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
15 Hb_002687_110 0.0949671047 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
16 Hb_131864_040 0.0953923487 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
17 Hb_000223_150 0.0962752463 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
18 Hb_000029_020 0.096442473 - - Vesicle-associated membrane protein, putative [Ricinus communis]
19 Hb_000205_270 0.0969253973 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
20 Hb_001329_300 0.0992656984 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]

Gene co-expression network

sample Hb_001158_140 Hb_001158_140 Hb_006816_140 Hb_006816_140 Hb_001158_140--Hb_006816_140 Hb_000200_050 Hb_000200_050 Hb_001158_140--Hb_000200_050 Hb_005488_010 Hb_005488_010 Hb_001158_140--Hb_005488_010 Hb_003266_130 Hb_003266_130 Hb_001158_140--Hb_003266_130 Hb_004993_050 Hb_004993_050 Hb_001158_140--Hb_004993_050 Hb_003018_190 Hb_003018_190 Hb_001158_140--Hb_003018_190 Hb_006816_140--Hb_000200_050 Hb_006816_140--Hb_003266_130 Hb_016901_010 Hb_016901_010 Hb_006816_140--Hb_016901_010 Hb_000997_400 Hb_000997_400 Hb_006816_140--Hb_000997_400 Hb_000614_230 Hb_000614_230 Hb_006816_140--Hb_000614_230 Hb_004976_030 Hb_004976_030 Hb_000200_050--Hb_004976_030 Hb_016065_010 Hb_016065_010 Hb_000200_050--Hb_016065_010 Hb_003996_020 Hb_003996_020 Hb_000200_050--Hb_003996_020 Hb_002835_410 Hb_002835_410 Hb_000200_050--Hb_002835_410 Hb_005488_010--Hb_016065_010 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_055062_030 Hb_055062_030 Hb_005488_010--Hb_055062_030 Hb_000205_270 Hb_000205_270 Hb_005488_010--Hb_000205_270 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060 Hb_178968_110 Hb_178968_110 Hb_003266_130--Hb_178968_110 Hb_003266_130--Hb_000614_230 Hb_003266_130--Hb_005488_010 Hb_010172_050 Hb_010172_050 Hb_003266_130--Hb_010172_050 Hb_002056_060 Hb_002056_060 Hb_004993_050--Hb_002056_060 Hb_004993_050--Hb_016901_010 Hb_004993_050--Hb_006816_140 Hb_005463_040 Hb_005463_040 Hb_004993_050--Hb_005463_040 Hb_001699_130 Hb_001699_130 Hb_004993_050--Hb_001699_130 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_003018_190--Hb_000997_400 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_003018_190--Hb_005488_010 Hb_006846_110 Hb_006846_110 Hb_003018_190--Hb_006846_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23633 0.68738 0.199035 1.07035 2.19094 2.54586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.42071 3.39536 4.28975 1.3316 1.03507

CAGE analysis