Hb_001158_150

Information

Type -
Description -
Location Contig1158: 97020-100882
Sequence    

Annotation

kegg
ID pop:POPTR_0012s10490g
description POPTRDRAFT_834364; hypothetical protein
nr
ID KDP22576.1
description hypothetical protein JCGZ_26407 [Jatropha curcas]
swissprot
ID Q9SW27
description Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1
trembl
ID A0A067JF82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26407 PE=4 SV=1
Gene Ontology
ID GO:0010286
description membrane-anchored ubiquitin-fold protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04750: 99278-99578 , PASA_asmbl_04751: 96973-100807 , PASA_asmbl_04752: 96962-100684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_150 0.0 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
2 Hb_003018_050 0.07630282 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
3 Hb_005278_020 0.0994946507 - - PREDICTED: sorcin-like [Jatropha curcas]
4 Hb_001842_040 0.0997638494 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
5 Hb_002631_020 0.1014359509 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
6 Hb_000364_020 0.1032907729 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
7 Hb_006452_040 0.1046443143 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
8 Hb_000363_320 0.1075161141 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
9 Hb_014834_030 0.1078550763 - - -
10 Hb_000995_040 0.109004316 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011161_050 0.1091076296 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
12 Hb_001882_070 0.1114351926 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
13 Hb_004374_140 0.1119606116 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
14 Hb_000283_110 0.1126837077 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
15 Hb_002878_010 0.1128581083 - - -
16 Hb_001754_070 0.113009057 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
17 Hb_000441_190 0.1155523335 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
18 Hb_004125_110 0.1179440939 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
19 Hb_130235_010 0.1187834449 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
20 Hb_012022_120 0.1191304513 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001158_150 Hb_001158_150 Hb_003018_050 Hb_003018_050 Hb_001158_150--Hb_003018_050 Hb_005278_020 Hb_005278_020 Hb_001158_150--Hb_005278_020 Hb_001842_040 Hb_001842_040 Hb_001158_150--Hb_001842_040 Hb_002631_020 Hb_002631_020 Hb_001158_150--Hb_002631_020 Hb_000364_020 Hb_000364_020 Hb_001158_150--Hb_000364_020 Hb_006452_040 Hb_006452_040 Hb_001158_150--Hb_006452_040 Hb_003018_050--Hb_002631_020 Hb_003018_050--Hb_006452_040 Hb_004125_110 Hb_004125_110 Hb_003018_050--Hb_004125_110 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_000122_020 Hb_000122_020 Hb_003018_050--Hb_000122_020 Hb_026314_020 Hb_026314_020 Hb_005278_020--Hb_026314_020 Hb_012022_120 Hb_012022_120 Hb_005278_020--Hb_012022_120 Hb_017413_010 Hb_017413_010 Hb_005278_020--Hb_017413_010 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_005278_020--Hb_001842_040 Hb_004784_020 Hb_004784_020 Hb_005278_020--Hb_004784_020 Hb_000441_190 Hb_000441_190 Hb_001842_040--Hb_000441_190 Hb_001461_010 Hb_001461_010 Hb_001842_040--Hb_001461_010 Hb_007100_030 Hb_007100_030 Hb_001842_040--Hb_007100_030 Hb_000283_110 Hb_000283_110 Hb_001842_040--Hb_000283_110 Hb_003893_050 Hb_003893_050 Hb_001842_040--Hb_003893_050 Hb_004449_200 Hb_004449_200 Hb_002631_020--Hb_004449_200 Hb_002631_020--Hb_006452_040 Hb_002631_020--Hb_000122_020 Hb_004374_140 Hb_004374_140 Hb_002631_020--Hb_004374_140 Hb_001191_090 Hb_001191_090 Hb_002631_020--Hb_001191_090 Hb_011161_050 Hb_011161_050 Hb_000364_020--Hb_011161_050 Hb_000086_550 Hb_000086_550 Hb_000364_020--Hb_000086_550 Hb_000364_020--Hb_000283_110 Hb_004336_050 Hb_004336_050 Hb_000364_020--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000364_020--Hb_000975_110 Hb_000751_130 Hb_000751_130 Hb_000364_020--Hb_000751_130 Hb_001155_040 Hb_001155_040 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_005463_140 Hb_005463_140 Hb_006452_040--Hb_005463_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1167 7.02894 8.50594 49.1113 18.0194 37.579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.2062 83.5996 39.4881 10.7855 9.12085

CAGE analysis