Hb_001158_160

Information

Type -
Description -
Location Contig1158: 100814-110277
Sequence    

Annotation

kegg
ID rcu:RCOM_1504920
description ribosomal pseudouridine synthase, putative (EC:3.2.1.17)
nr
ID XP_012090638.1
description PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
swissprot
ID Q0E0Y3
description RNA pseudouridine synthase 7 OS=Oryza sativa subsp. japonica GN=Os02g0512300 PE=2 SV=2
trembl
ID A0A067JRF5
description Pseudouridine synthase OS=Jatropha curcas GN=JCGZ_26406 PE=3 SV=1
Gene Ontology
ID GO:0003723
description rna pseudouridine synthase 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04753: 101059-110125 , PASA_asmbl_04754: 101080-109801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_160 0.0 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
2 Hb_030414_040 0.0568874629 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
3 Hb_000826_030 0.0614575772 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
4 Hb_021943_080 0.0698076904 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
5 Hb_031284_010 0.0708427659 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
6 Hb_000120_210 0.0719753337 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
7 Hb_004096_240 0.0732402743 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
8 Hb_004109_120 0.076685872 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
9 Hb_000175_410 0.0770958424 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
10 Hb_000254_100 0.0789461218 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
11 Hb_007283_010 0.0791689107 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
12 Hb_033642_040 0.0818735715 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
13 Hb_002374_230 0.0843144335 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
14 Hb_000847_080 0.0845522526 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
15 Hb_003186_020 0.0847897155 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
16 Hb_000098_240 0.0861413676 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
17 Hb_000364_100 0.0865377992 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
18 Hb_077026_010 0.0871288187 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
19 Hb_138435_010 0.0876816554 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
20 Hb_005288_070 0.0876920765 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001158_160 Hb_001158_160 Hb_030414_040 Hb_030414_040 Hb_001158_160--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_001158_160--Hb_000826_030 Hb_021943_080 Hb_021943_080 Hb_001158_160--Hb_021943_080 Hb_031284_010 Hb_031284_010 Hb_001158_160--Hb_031284_010 Hb_000120_210 Hb_000120_210 Hb_001158_160--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_001158_160--Hb_004096_240 Hb_030414_040--Hb_000120_210 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_000111_170 Hb_000111_170 Hb_030414_040--Hb_000111_170 Hb_002876_300 Hb_002876_300 Hb_000826_030--Hb_002876_300 Hb_000826_030--Hb_030414_040 Hb_010174_090 Hb_010174_090 Hb_000826_030--Hb_010174_090 Hb_012438_030 Hb_012438_030 Hb_000826_030--Hb_012438_030 Hb_000364_100 Hb_000364_100 Hb_000826_030--Hb_000364_100 Hb_021943_080--Hb_000120_210 Hb_001089_070 Hb_001089_070 Hb_021943_080--Hb_001089_070 Hb_016777_040 Hb_016777_040 Hb_021943_080--Hb_016777_040 Hb_021943_080--Hb_004096_240 Hb_077026_010 Hb_077026_010 Hb_021943_080--Hb_077026_010 Hb_008059_010 Hb_008059_010 Hb_031284_010--Hb_008059_010 Hb_000115_280 Hb_000115_280 Hb_031284_010--Hb_000115_280 Hb_003186_020 Hb_003186_020 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_031284_010--Hb_000120_210 Hb_000457_230 Hb_000457_230 Hb_031284_010--Hb_000457_230 Hb_000120_210--Hb_004096_240 Hb_001153_210 Hb_001153_210 Hb_000120_210--Hb_001153_210 Hb_000120_210--Hb_000111_170 Hb_004096_240--Hb_031284_010 Hb_000375_390 Hb_000375_390 Hb_004096_240--Hb_000375_390 Hb_004096_240--Hb_003186_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59881 5.71693 12.7353 5.89191 5.91928 6.57739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.256 3.84143 2.44888 6.48076 10.3482

CAGE analysis