Hb_001158_210

Information

Type -
Description -
Location Contig1158: 174148-175653
Sequence    

Annotation

kegg
ID rcu:RCOM_1504880
description hypothetical protein
nr
ID XP_002511125.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A2XGM7
description Bidirectional sugar transporter SWEET12 OS=Oryza sativa subsp. indica GN=SWEET12 PE=3 SV=1
trembl
ID B9RAA0
description Sugar transporter SWEET OS=Ricinus communis GN=RCOM_1504880 PE=3 SV=1
Gene Ontology
ID GO:0005886
description bidirectional sugar transporter sweet12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04758: 174353-175654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_128935_010 0.0070557548 - - E3 ubiquitin-protein ligase UPL5 [Glycine soja]
3 Hb_003841_010 0.0073466855 - - -
4 Hb_002292_060 0.008367064 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
5 Hb_000853_320 0.0089918861 - - -
6 Hb_004669_010 0.0099020765 - - hypothetical protein JCGZ_26481 [Jatropha curcas]
7 Hb_001660_110 0.010044214 - - amino acid transporter, putative [Ricinus communis]
8 Hb_006277_040 0.0102679184 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
9 Hb_001973_020 0.0108242239 - - -
10 Hb_001205_260 0.0132567928 - - DWNN domain isoform 2 [Theobroma cacao]
11 Hb_000235_020 0.0135406178 - - conserved hypothetical protein [Ricinus communis]
12 Hb_028447_010 0.0148207697 - - hypothetical protein RCOM_1967580 [Ricinus communis]
13 Hb_004586_100 0.0153076158 - - PREDICTED: uncharacterized protein LOC105120428 isoform X2 [Populus euphratica]
14 Hb_001545_090 0.017500219 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
15 Hb_003203_010 0.0198386803 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
16 Hb_002909_030 0.0221558733 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
17 Hb_001343_070 0.0223378503 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
18 Hb_001098_060 0.0224453614 - - -
19 Hb_001140_120 0.0233052977 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
20 Hb_000762_100 0.0236080952 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]

Gene co-expression network

sample Hb_001158_210 Hb_001158_210 Hb_128935_010 Hb_128935_010 Hb_001158_210--Hb_128935_010 Hb_003841_010 Hb_003841_010 Hb_001158_210--Hb_003841_010 Hb_002292_060 Hb_002292_060 Hb_001158_210--Hb_002292_060 Hb_000853_320 Hb_000853_320 Hb_001158_210--Hb_000853_320 Hb_004669_010 Hb_004669_010 Hb_001158_210--Hb_004669_010 Hb_001660_110 Hb_001660_110 Hb_001158_210--Hb_001660_110 Hb_128935_010--Hb_003841_010 Hb_128935_010--Hb_002292_060 Hb_128935_010--Hb_000853_320 Hb_128935_010--Hb_001660_110 Hb_006277_040 Hb_006277_040 Hb_128935_010--Hb_006277_040 Hb_001973_020 Hb_001973_020 Hb_128935_010--Hb_001973_020 Hb_003841_010--Hb_002292_060 Hb_003841_010--Hb_000853_320 Hb_003841_010--Hb_001660_110 Hb_003841_010--Hb_006277_040 Hb_003841_010--Hb_001973_020 Hb_002292_060--Hb_000853_320 Hb_002292_060--Hb_001660_110 Hb_002292_060--Hb_006277_040 Hb_002292_060--Hb_001973_020 Hb_000853_320--Hb_001660_110 Hb_000853_320--Hb_006277_040 Hb_000853_320--Hb_001973_020 Hb_001205_260 Hb_001205_260 Hb_004669_010--Hb_001205_260 Hb_028447_010 Hb_028447_010 Hb_004669_010--Hb_028447_010 Hb_004586_100 Hb_004586_100 Hb_004669_010--Hb_004586_100 Hb_003203_010 Hb_003203_010 Hb_004669_010--Hb_003203_010 Hb_001098_060 Hb_001098_060 Hb_004669_010--Hb_001098_060 Hb_001660_110--Hb_006277_040 Hb_001660_110--Hb_001973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0216243 0.0470827 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis