Hb_001159_010

Information

Type -
Description -
Location Contig1159: 5290-9157
Sequence    

Annotation

kegg
ID rcu:RCOM_1680770
description hypothetical protein
nr
ID XP_002509617.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID B9RBT3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1680770 PE=4 SV=1
Gene Ontology
ID GO:0031625
description cullin-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_034083_020 0.0714973989 - - conserved hypothetical protein [Ricinus communis]
3 Hb_084670_010 0.0860087409 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000909_080 0.0917889619 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
5 Hb_000365_010 0.0999766093 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
6 Hb_004218_180 0.1009461507 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
7 Hb_011224_050 0.1010473118 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
8 Hb_011537_060 0.1015350067 - - UPF0061 protein azo1574 [Morus notabilis]
9 Hb_001951_060 0.1066993107 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
10 Hb_001975_150 0.11087527 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
11 Hb_003517_070 0.1149441409 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
12 Hb_003340_010 0.1152008951 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
13 Hb_000358_020 0.1153369976 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
14 Hb_000535_050 0.1154336284 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
15 Hb_002025_030 0.1161298566 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_000035_260 0.1210525988 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
17 Hb_000173_130 0.1215513751 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
18 Hb_000803_320 0.12197401 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
19 Hb_028487_160 0.1241813443 - - clathrin assembly protein, putative [Ricinus communis]
20 Hb_004957_030 0.12677202 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]

Gene co-expression network

sample Hb_001159_010 Hb_001159_010 Hb_034083_020 Hb_034083_020 Hb_001159_010--Hb_034083_020 Hb_084670_010 Hb_084670_010 Hb_001159_010--Hb_084670_010 Hb_000909_080 Hb_000909_080 Hb_001159_010--Hb_000909_080 Hb_000365_010 Hb_000365_010 Hb_001159_010--Hb_000365_010 Hb_004218_180 Hb_004218_180 Hb_001159_010--Hb_004218_180 Hb_011224_050 Hb_011224_050 Hb_001159_010--Hb_011224_050 Hb_034083_020--Hb_000909_080 Hb_001951_060 Hb_001951_060 Hb_034083_020--Hb_001951_060 Hb_000358_020 Hb_000358_020 Hb_034083_020--Hb_000358_020 Hb_005218_080 Hb_005218_080 Hb_034083_020--Hb_005218_080 Hb_034083_020--Hb_000365_010 Hb_055062_040 Hb_055062_040 Hb_084670_010--Hb_055062_040 Hb_000358_050 Hb_000358_050 Hb_084670_010--Hb_000358_050 Hb_011537_060 Hb_011537_060 Hb_084670_010--Hb_011537_060 Hb_007558_100 Hb_007558_100 Hb_084670_010--Hb_007558_100 Hb_016347_010 Hb_016347_010 Hb_084670_010--Hb_016347_010 Hb_000909_080--Hb_000358_020 Hb_003440_020 Hb_003440_020 Hb_000909_080--Hb_003440_020 Hb_055690_010 Hb_055690_010 Hb_000909_080--Hb_055690_010 Hb_000909_080--Hb_000365_010 Hb_001105_100 Hb_001105_100 Hb_000909_080--Hb_001105_100 Hb_001301_280 Hb_001301_280 Hb_000365_010--Hb_001301_280 Hb_000365_010--Hb_000358_020 Hb_001141_240 Hb_001141_240 Hb_000365_010--Hb_001141_240 Hb_000365_010--Hb_011224_050 Hb_000365_010--Hb_001951_060 Hb_006100_020 Hb_006100_020 Hb_004218_180--Hb_006100_020 Hb_000270_170 Hb_000270_170 Hb_004218_180--Hb_000270_170 Hb_004218_180--Hb_011537_060 Hb_001975_150 Hb_001975_150 Hb_004218_180--Hb_001975_150 Hb_008948_020 Hb_008948_020 Hb_004218_180--Hb_008948_020 Hb_004218_180--Hb_001141_240 Hb_015675_040 Hb_015675_040 Hb_011224_050--Hb_015675_040 Hb_003878_150 Hb_003878_150 Hb_011224_050--Hb_003878_150 Hb_001195_400 Hb_001195_400 Hb_011224_050--Hb_001195_400 Hb_011224_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_011224_050--Hb_000504_180 Hb_028487_160 Hb_028487_160 Hb_011224_050--Hb_028487_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.600034 1.93712 1.84582 3.06236 0.74029 1.77871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.732374 2.2322 1.3322 3.52612 3.99962

CAGE analysis