Hb_001159_050

Information

Type -
Description -
Location Contig1159: 35453-37070
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11530g
description POPTRDRAFT_554246; hypothetical protein
nr
ID XP_012087095.1
description PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20748 PE=4 SV=1
Gene Ontology
ID GO:0005615
description cyclin-dependent kinase-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04769: 35431-35528 , PASA_asmbl_04770: 35706-37211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_050 0.0 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
2 Hb_000155_020 0.0539240331 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_001424_010 0.0633883385 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_011013_040 0.0666574269 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
5 Hb_000025_700 0.0678443542 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
6 Hb_002272_210 0.0692600023 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
7 Hb_012395_090 0.0703102952 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
8 Hb_001975_120 0.0710816191 - - chlorophyll a/b binding protein type II [Glycine max]
9 Hb_000962_090 0.0722099783 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
10 Hb_000530_040 0.0757347701 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
11 Hb_002007_220 0.0762891481 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
12 Hb_005329_010 0.0764507942 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
13 Hb_003038_230 0.0779358876 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
14 Hb_003623_080 0.0793293218 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
15 Hb_000460_040 0.079886244 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
16 Hb_005211_080 0.0806373985 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
17 Hb_000088_230 0.0806703687 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
18 Hb_001343_030 0.0826183305 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
19 Hb_078954_030 0.0831741222 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000697_030 0.0839083384 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001159_050 Hb_001159_050 Hb_000155_020 Hb_000155_020 Hb_001159_050--Hb_000155_020 Hb_001424_010 Hb_001424_010 Hb_001159_050--Hb_001424_010 Hb_011013_040 Hb_011013_040 Hb_001159_050--Hb_011013_040 Hb_000025_700 Hb_000025_700 Hb_001159_050--Hb_000025_700 Hb_002272_210 Hb_002272_210 Hb_001159_050--Hb_002272_210 Hb_012395_090 Hb_012395_090 Hb_001159_050--Hb_012395_090 Hb_000155_020--Hb_011013_040 Hb_000155_020--Hb_012395_090 Hb_002007_220 Hb_002007_220 Hb_000155_020--Hb_002007_220 Hb_010136_010 Hb_010136_010 Hb_000155_020--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_000155_020--Hb_004017_030 Hb_000530_040 Hb_000530_040 Hb_001424_010--Hb_000530_040 Hb_078954_030 Hb_078954_030 Hb_001424_010--Hb_078954_030 Hb_179129_010 Hb_179129_010 Hb_001424_010--Hb_179129_010 Hb_000697_030 Hb_000697_030 Hb_001424_010--Hb_000697_030 Hb_016371_010 Hb_016371_010 Hb_001424_010--Hb_016371_010 Hb_001424_010--Hb_000025_700 Hb_011013_040--Hb_012395_090 Hb_001266_010 Hb_001266_010 Hb_011013_040--Hb_001266_010 Hb_002702_010 Hb_002702_010 Hb_011013_040--Hb_002702_010 Hb_003038_230 Hb_003038_230 Hb_011013_040--Hb_003038_230 Hb_000025_700--Hb_078954_030 Hb_000025_700--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_000025_700--Hb_004346_050 Hb_001369_340 Hb_001369_340 Hb_000025_700--Hb_001369_340 Hb_000025_700--Hb_016371_010 Hb_003623_080 Hb_003623_080 Hb_002272_210--Hb_003623_080 Hb_001343_030 Hb_001343_030 Hb_002272_210--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_002272_210--Hb_007597_030 Hb_001006_040 Hb_001006_040 Hb_002272_210--Hb_001006_040 Hb_146225_020 Hb_146225_020 Hb_002272_210--Hb_146225_020 Hb_001975_120 Hb_001975_120 Hb_002272_210--Hb_001975_120 Hb_012395_090--Hb_002702_010 Hb_001942_010 Hb_001942_010 Hb_012395_090--Hb_001942_010 Hb_004223_150 Hb_004223_150 Hb_012395_090--Hb_004223_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.52854 24.7321 9.88043 0.0406178 0.0554264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0495173 0 0.207555 25.4249

CAGE analysis