Hb_001159_070

Information

Type -
Description -
Location Contig1159: 54480-56530
Sequence    

Annotation

kegg
ID rcu:RCOM_1680910
description DNA photolyase, putative (EC:4.1.99.3)
nr
ID XP_002509621.1
description DNA photolyase, putative [Ricinus communis]
swissprot
ID Q9SB00
description Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1 PE=2 SV=1
trembl
ID B9RBT7
description DNA photolyase, putative OS=Ricinus communis GN=RCOM_1680910 PE=4 SV=1
Gene Ontology
ID GO:0003904
description deoxyribodipyrimidine photo-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_070 0.0 - - DNA photolyase, putative [Ricinus communis]
2 Hb_000392_260 0.0725609087 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
3 Hb_000711_030 0.093767 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
4 Hb_004920_020 0.0984667259 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
5 Hb_000950_020 0.0995523044 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
6 Hb_005000_110 0.1004788546 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
7 Hb_000948_120 0.104055508 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
8 Hb_000300_110 0.1061873246 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
9 Hb_004994_030 0.1161645745 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
10 Hb_023344_090 0.1166674739 - - Photosystem II reaction center W protein, putative [Ricinus communis]
11 Hb_092516_010 0.119117585 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
12 Hb_000239_050 0.1210803642 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
13 Hb_000962_090 0.1216828105 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
14 Hb_000345_400 0.1219935576 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003937_010 0.1230291437 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
16 Hb_015044_010 0.123313419 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
17 Hb_000128_040 0.1243087682 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
18 Hb_029920_010 0.1258317081 - - pepsin A, putative [Ricinus communis]
19 Hb_001014_240 0.1259187577 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
20 Hb_000808_130 0.1260214125 - - 3-5 exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_001159_070 Hb_001159_070 Hb_000392_260 Hb_000392_260 Hb_001159_070--Hb_000392_260 Hb_000711_030 Hb_000711_030 Hb_001159_070--Hb_000711_030 Hb_004920_020 Hb_004920_020 Hb_001159_070--Hb_004920_020 Hb_000950_020 Hb_000950_020 Hb_001159_070--Hb_000950_020 Hb_005000_110 Hb_005000_110 Hb_001159_070--Hb_005000_110 Hb_000948_120 Hb_000948_120 Hb_001159_070--Hb_000948_120 Hb_000283_030 Hb_000283_030 Hb_000392_260--Hb_000283_030 Hb_000300_110 Hb_000300_110 Hb_000392_260--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_000392_260--Hb_000424_130 Hb_005535_070 Hb_005535_070 Hb_000392_260--Hb_005535_070 Hb_000392_260--Hb_000711_030 Hb_004650_050 Hb_004650_050 Hb_000711_030--Hb_004650_050 Hb_009838_070 Hb_009838_070 Hb_000711_030--Hb_009838_070 Hb_000711_030--Hb_000950_020 Hb_000327_260 Hb_000327_260 Hb_000711_030--Hb_000327_260 Hb_000711_030--Hb_005000_110 Hb_000128_040 Hb_000128_040 Hb_004920_020--Hb_000128_040 Hb_004920_020--Hb_000950_020 Hb_004920_020--Hb_005000_110 Hb_000544_070 Hb_000544_070 Hb_004920_020--Hb_000544_070 Hb_005211_080 Hb_005211_080 Hb_004920_020--Hb_005211_080 Hb_004920_020--Hb_000300_110 Hb_006970_030 Hb_006970_030 Hb_000950_020--Hb_006970_030 Hb_002235_070 Hb_002235_070 Hb_000950_020--Hb_002235_070 Hb_000950_020--Hb_000544_070 Hb_001343_030 Hb_001343_030 Hb_005000_110--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_005000_110--Hb_007597_030 Hb_000808_130 Hb_000808_130 Hb_005000_110--Hb_000808_130 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_023344_090 Hb_023344_090 Hb_005000_110--Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_005000_110--Hb_001488_250 Hb_002636_030 Hb_002636_030 Hb_000948_120--Hb_002636_030 Hb_121089_010 Hb_121089_010 Hb_000948_120--Hb_121089_010 Hb_001227_140 Hb_001227_140 Hb_000948_120--Hb_001227_140 Hb_003680_060 Hb_003680_060 Hb_000948_120--Hb_003680_060 Hb_000140_460 Hb_000140_460 Hb_000948_120--Hb_000140_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0335344 0.412297 4.46298 1.65288 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.077367 0.0608245 0.108921 0.469563 4.46836

CAGE analysis