Hb_001159_080

Information

Type -
Description -
Location Contig1159: 64360-66702
Sequence    

Annotation

kegg
ID rcu:RCOM_1681020
description hypothetical protein
nr
ID KDP25589.1
description hypothetical protein JCGZ_20745 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1C1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20745 PE=4 SV=1
Gene Ontology
ID GO:0003676
description isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_080 0.0 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
2 Hb_001096_110 0.087257429 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
3 Hb_003581_260 0.0888138964 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
4 Hb_000327_220 0.1059794 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
5 Hb_000141_020 0.1062145571 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
6 Hb_000125_030 0.1113588798 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
7 Hb_000099_130 0.1118758443 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
8 Hb_003551_050 0.1135870726 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
9 Hb_006472_050 0.1176068819 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
10 Hb_000963_140 0.1217173068 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_005569_020 0.1223151136 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003642_050 0.122378798 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
13 Hb_002239_060 0.123082711 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
14 Hb_004414_050 0.1236700992 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_093458_050 0.1261812438 - - glutathione reductase [Hevea brasiliensis]
16 Hb_000196_080 0.1266931028 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
17 Hb_005224_010 0.1271962848 - - glycine-rich protein [Bruguiera gymnorhiza]
18 Hb_000406_120 0.1295140936 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
19 Hb_003994_190 0.1299995667 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007429_030 0.1308051627 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001159_080 Hb_001159_080 Hb_001096_110 Hb_001096_110 Hb_001159_080--Hb_001096_110 Hb_003581_260 Hb_003581_260 Hb_001159_080--Hb_003581_260 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_000141_020 Hb_000141_020 Hb_001159_080--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_001159_080--Hb_000125_030 Hb_000099_130 Hb_000099_130 Hb_001159_080--Hb_000099_130 Hb_005569_020 Hb_005569_020 Hb_001096_110--Hb_005569_020 Hb_001096_110--Hb_003581_260 Hb_010407_180 Hb_010407_180 Hb_001096_110--Hb_010407_180 Hb_001279_340 Hb_001279_340 Hb_001096_110--Hb_001279_340 Hb_000108_070 Hb_000108_070 Hb_001096_110--Hb_000108_070 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_003581_260--Hb_001135_210 Hb_002756_020 Hb_002756_020 Hb_000327_220--Hb_002756_020 Hb_011030_020 Hb_011030_020 Hb_000327_220--Hb_011030_020 Hb_005224_010 Hb_005224_010 Hb_000327_220--Hb_005224_010 Hb_003551_050 Hb_003551_050 Hb_000327_220--Hb_003551_050 Hb_000789_220 Hb_000789_220 Hb_000327_220--Hb_000789_220 Hb_003504_020 Hb_003504_020 Hb_000141_020--Hb_003504_020 Hb_000141_020--Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000141_020--Hb_000406_120 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_000125_030--Hb_003504_020 Hb_000125_030--Hb_010407_180 Hb_000099_130--Hb_001135_210 Hb_001232_140 Hb_001232_140 Hb_000099_130--Hb_001232_140 Hb_000424_210 Hb_000424_210 Hb_000099_130--Hb_000424_210 Hb_162275_030 Hb_162275_030 Hb_000099_130--Hb_162275_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1261 1.16139 0.913196 2.10419 0.845616 1.45928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.77819 5.13246 10.282 2.01541 1.0133

CAGE analysis