Hb_001159_100

Information

Type -
Description -
Location Contig1159: 96501-98237
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11580g
description POPTRDRAFT_554250; pentatricopeptide repeat-containing family protein
nr
ID XP_012087236.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
swissprot
ID P0C8Q5
description Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1
trembl
ID B9GVT5
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0003s11580g PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g22760

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_100 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
2 Hb_029584_130 0.0651471468 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
3 Hb_007951_050 0.0661336286 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000776_110 0.0709737892 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
5 Hb_002496_030 0.0727617019 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
6 Hb_000427_050 0.0731371912 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000022_250 0.0771850267 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
8 Hb_000754_060 0.0776862296 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
9 Hb_000175_450 0.0781217587 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
10 Hb_001269_550 0.0785689032 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
11 Hb_004837_040 0.0827388878 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
12 Hb_010172_050 0.08595132 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
13 Hb_034585_060 0.0873654516 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
14 Hb_002810_020 0.0876311441 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
15 Hb_002026_180 0.0877737169 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
16 Hb_001507_020 0.0878498421 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
17 Hb_000554_020 0.0897686922 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
18 Hb_175338_030 0.0904562807 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
19 Hb_002678_020 0.0916296096 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
20 Hb_000457_150 0.0921062551 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]

Gene co-expression network

sample Hb_001159_100 Hb_001159_100 Hb_029584_130 Hb_029584_130 Hb_001159_100--Hb_029584_130 Hb_007951_050 Hb_007951_050 Hb_001159_100--Hb_007951_050 Hb_000776_110 Hb_000776_110 Hb_001159_100--Hb_000776_110 Hb_002496_030 Hb_002496_030 Hb_001159_100--Hb_002496_030 Hb_000427_050 Hb_000427_050 Hb_001159_100--Hb_000427_050 Hb_000022_250 Hb_000022_250 Hb_001159_100--Hb_000022_250 Hb_000007_150 Hb_000007_150 Hb_029584_130--Hb_000007_150 Hb_034585_060 Hb_034585_060 Hb_029584_130--Hb_034585_060 Hb_000297_200 Hb_000297_200 Hb_029584_130--Hb_000297_200 Hb_000754_060 Hb_000754_060 Hb_029584_130--Hb_000754_060 Hb_029584_130--Hb_000427_050 Hb_000421_260 Hb_000421_260 Hb_007951_050--Hb_000421_260 Hb_007951_050--Hb_000754_060 Hb_007951_050--Hb_002496_030 Hb_015306_020 Hb_015306_020 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_001269_550 Hb_001269_550 Hb_000776_110--Hb_001269_550 Hb_000152_820 Hb_000152_820 Hb_000776_110--Hb_000152_820 Hb_001975_160 Hb_001975_160 Hb_000776_110--Hb_001975_160 Hb_002039_010 Hb_002039_010 Hb_000776_110--Hb_002039_010 Hb_000317_020 Hb_000317_020 Hb_000776_110--Hb_000317_020 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_002496_030--Hb_001269_550 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_002678_020 Hb_002678_020 Hb_000427_050--Hb_002678_020 Hb_000427_050--Hb_000007_150 Hb_001266_060 Hb_001266_060 Hb_000427_050--Hb_001266_060 Hb_004452_010 Hb_004452_010 Hb_000427_050--Hb_004452_010 Hb_002810_020 Hb_002810_020 Hb_000022_250--Hb_002810_020 Hb_000022_250--Hb_007951_050 Hb_000554_020 Hb_000554_020 Hb_000022_250--Hb_000554_020 Hb_010172_050 Hb_010172_050 Hb_000022_250--Hb_010172_050 Hb_001488_330 Hb_001488_330 Hb_000022_250--Hb_001488_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05777 1.35275 0.70236 0.424488 1.30947 2.48147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53252 1.72549 2.98373 1.05193 0.699783

CAGE analysis