Hb_001159_130

Information

Type -
Description -
Location Contig1159: 130840-133556
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08080g
description cornichon family protein
nr
ID XP_012087083.1
description PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
swissprot
ID Q84W04
description Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1
trembl
ID B9N3L2
description Cornichon family protein OS=Populus trichocarpa GN=POPTR_0001s08080g PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein cornichon homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04779: 130896-133514 , PASA_asmbl_04780: 131341-131590
cDNA
(Sanger)
(ID:Location)		 025_P16.ab1: 130896-133451 , 047_B19.ab1: 130896-133437

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_130 0.0 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
2 Hb_000116_270 0.049112721 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
3 Hb_155159_020 0.0540599797 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
4 Hb_003177_030 0.0602426501 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
5 Hb_000603_150 0.0603912825 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
6 Hb_000200_020 0.0651936827 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
7 Hb_000019_030 0.0656846077 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
8 Hb_001936_010 0.0660945552 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
9 Hb_000300_500 0.0679814266 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
10 Hb_006455_120 0.068291172 - - n6-DNA-methyltransferase, putative [Ricinus communis]
11 Hb_027380_130 0.0685233136 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
12 Hb_022115_020 0.0700031493 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
13 Hb_001633_130 0.070319186 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
14 Hb_000580_180 0.0721981381 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001300_150 0.073206227 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
16 Hb_005144_160 0.0734401057 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
17 Hb_000749_220 0.0753255787 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
18 Hb_000260_350 0.0754692539 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000465_160 0.0755733097 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
20 Hb_001511_060 0.0763790076 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001159_130 Hb_001159_130 Hb_000116_270 Hb_000116_270 Hb_001159_130--Hb_000116_270 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_000603_150 Hb_000603_150 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_000116_270--Hb_000200_020 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_022115_020 Hb_022115_020 Hb_155159_020--Hb_022115_020 Hb_155159_020--Hb_084646_010 Hb_155159_020--Hb_000116_270 Hb_155159_020--Hb_000603_150 Hb_000787_020 Hb_000787_020 Hb_155159_020--Hb_000787_020 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_003177_030--Hb_000019_030 Hb_006455_120 Hb_006455_120 Hb_000603_150--Hb_006455_120 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000120_670 Hb_000120_670 Hb_000603_150--Hb_000120_670 Hb_000580_180 Hb_000580_180 Hb_000603_150--Hb_000580_180 Hb_003549_150 Hb_003549_150 Hb_000603_150--Hb_003549_150 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_001366_370 Hb_001366_370 Hb_000200_020--Hb_001366_370 Hb_000783_010 Hb_000783_010 Hb_000200_020--Hb_000783_010 Hb_001218_030 Hb_001218_030 Hb_000200_020--Hb_001218_030 Hb_005357_080 Hb_005357_080 Hb_000019_030--Hb_005357_080 Hb_001575_090 Hb_001575_090 Hb_000019_030--Hb_001575_090 Hb_000019_030--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_000019_030--Hb_011671_240 Hb_000468_060 Hb_000468_060 Hb_000019_030--Hb_000468_060 Hb_000618_040 Hb_000618_040 Hb_000019_030--Hb_000618_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0227 21.5068 27.5556 51.6499 28.1989 38.0284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.1327 39.5585 48.7897 31.6016 21.8596

CAGE analysis