Hb_001159_140

Information

Type -
Description -
Location Contig1159: 134330-137992
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08090g
description hypothetical protein
nr
ID XP_006368720.1
description hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
swissprot
ID Q5ZKH0
description General transcription factor IIH subunit 5 OS=Gallus gallus GN=GTF2H5 PE=3 SV=1
trembl
ID B9N3L1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08090g PE=4 SV=1
Gene Ontology
ID GO:0000439
description general transcription factor iih subunit 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04779: 130896-133514 , PASA_asmbl_04781: 134789-134922 , PASA_asmbl_04782: 135365-135649 , PASA_asmbl_04783: 135713-135956
cDNA
(Sanger)
(ID:Location)		 025_P16.ab1: 130896-133451 , 047_B19.ab1: 130896-133437

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_140 0.0 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
2 Hb_000866_270 0.0616306043 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
3 Hb_005357_030 0.0747550948 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
4 Hb_007590_050 0.0755848954 - - NudC domain-containing protein, putative [Ricinus communis]
5 Hb_003126_080 0.0765970539 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
6 Hb_001766_110 0.0781608442 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
7 Hb_001259_090 0.0785107897 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
8 Hb_000109_160 0.0796491282 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
9 Hb_000656_400 0.0804810454 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
10 Hb_002868_010 0.0834501365 - - 60S ribosomal protein L30, putative [Ricinus communis]
11 Hb_000661_250 0.0853179998 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
12 Hb_000698_030 0.0856014572 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
13 Hb_001481_090 0.0867864771 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
14 Hb_001269_630 0.0881359893 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
15 Hb_001540_010 0.088242438 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
16 Hb_028995_040 0.0883525989 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
17 Hb_019253_020 0.0888885108 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
18 Hb_096563_010 0.0889494495 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
19 Hb_002685_170 0.0891214836 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
20 Hb_000200_100 0.0894771552 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001159_140 Hb_001159_140 Hb_000866_270 Hb_000866_270 Hb_001159_140--Hb_000866_270 Hb_005357_030 Hb_005357_030 Hb_001159_140--Hb_005357_030 Hb_007590_050 Hb_007590_050 Hb_001159_140--Hb_007590_050 Hb_003126_080 Hb_003126_080 Hb_001159_140--Hb_003126_080 Hb_001766_110 Hb_001766_110 Hb_001159_140--Hb_001766_110 Hb_001259_090 Hb_001259_090 Hb_001159_140--Hb_001259_090 Hb_000866_270--Hb_001259_090 Hb_002007_060 Hb_002007_060 Hb_000866_270--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000866_270--Hb_023226_040 Hb_028995_040 Hb_028995_040 Hb_000866_270--Hb_028995_040 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_004223_280 Hb_004223_280 Hb_005357_030--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_005357_030--Hb_002685_170 Hb_005357_030--Hb_007590_050 Hb_001138_050 Hb_001138_050 Hb_005357_030--Hb_001138_050 Hb_019253_020 Hb_019253_020 Hb_005357_030--Hb_019253_020 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160 Hb_007590_050--Hb_002685_170 Hb_000109_160 Hb_000109_160 Hb_007590_050--Hb_000109_160 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_020956_020 Hb_020956_020 Hb_007590_050--Hb_020956_020 Hb_007590_050--Hb_003126_080 Hb_003126_080--Hb_000656_400 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_003126_080--Hb_004223_280 Hb_001481_090 Hb_001481_090 Hb_001766_110--Hb_001481_090 Hb_001766_110--Hb_000656_400 Hb_001766_110--Hb_003126_080 Hb_000251_130 Hb_000251_130 Hb_001766_110--Hb_000251_130 Hb_003952_090 Hb_003952_090 Hb_001766_110--Hb_003952_090 Hb_000085_050 Hb_000085_050 Hb_001766_110--Hb_000085_050 Hb_001259_090--Hb_000661_250 Hb_096563_010 Hb_096563_010 Hb_001259_090--Hb_096563_010 Hb_001259_090--Hb_002007_060 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_001259_090--Hb_000656_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1808 6.13841 3.17346 4.62852 9.19505 7.07785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.50321 16.0356 6.60311 5.20353 2.51904

CAGE analysis