Hb_001159_170

Information

Type -
Description -
Location Contig1159: 143798-147950
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08110g
description DNA-binding family protein
nr
ID XP_012087078.1
description PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
swissprot
ID Q8VYJ2
description AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 SV=1
trembl
ID A0A067JNW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20738 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_170 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
2 Hb_000970_020 0.0992846125 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
3 Hb_004324_030 0.1228391663 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
4 Hb_007416_290 0.1334409592 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
5 Hb_000959_120 0.1359986403 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
6 Hb_009545_030 0.1360022912 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
7 Hb_007134_030 0.1445579878 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
8 Hb_000155_040 0.1460249035 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
9 Hb_000181_210 0.1472748133 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
10 Hb_042509_020 0.1476303486 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
11 Hb_078361_010 0.1527898943 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
12 Hb_002814_050 0.1551777772 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
13 Hb_007632_130 0.1555128049 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
14 Hb_026549_050 0.1568309904 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
15 Hb_164117_010 0.1573030399 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
16 Hb_002448_020 0.1573766458 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
17 Hb_007138_030 0.1584277037 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
18 Hb_085315_010 0.160604115 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
19 Hb_000003_020 0.161557848 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
20 Hb_116194_010 0.1618774642 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_001159_170 Hb_001159_170 Hb_000970_020 Hb_000970_020 Hb_001159_170--Hb_000970_020 Hb_004324_030 Hb_004324_030 Hb_001159_170--Hb_004324_030 Hb_007416_290 Hb_007416_290 Hb_001159_170--Hb_007416_290 Hb_000959_120 Hb_000959_120 Hb_001159_170--Hb_000959_120 Hb_009545_030 Hb_009545_030 Hb_001159_170--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_001159_170--Hb_007134_030 Hb_000970_020--Hb_000959_120 Hb_002814_050 Hb_002814_050 Hb_000970_020--Hb_002814_050 Hb_003640_010 Hb_003640_010 Hb_000970_020--Hb_003640_010 Hb_002518_180 Hb_002518_180 Hb_000970_020--Hb_002518_180 Hb_000970_020--Hb_007416_290 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_042509_020 Hb_042509_020 Hb_004324_030--Hb_042509_020 Hb_026549_050 Hb_026549_050 Hb_004324_030--Hb_026549_050 Hb_000003_020 Hb_000003_020 Hb_004324_030--Hb_000003_020 Hb_000181_210 Hb_000181_210 Hb_004324_030--Hb_000181_210 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_022250_160 Hb_022250_160 Hb_007416_290--Hb_022250_160 Hb_008143_040 Hb_008143_040 Hb_007416_290--Hb_008143_040 Hb_007416_290--Hb_009545_030 Hb_007416_290--Hb_007134_030 Hb_004079_100 Hb_004079_100 Hb_007416_290--Hb_004079_100 Hb_000946_070 Hb_000946_070 Hb_007416_290--Hb_000946_070 Hb_000095_070 Hb_000095_070 Hb_000959_120--Hb_000095_070 Hb_001247_270 Hb_001247_270 Hb_000959_120--Hb_001247_270 Hb_000979_160 Hb_000979_160 Hb_000959_120--Hb_000979_160 Hb_001728_130 Hb_001728_130 Hb_000959_120--Hb_001728_130 Hb_001976_020 Hb_001976_020 Hb_000959_120--Hb_001976_020 Hb_004462_030 Hb_004462_030 Hb_000959_120--Hb_004462_030 Hb_009545_030--Hb_008143_040 Hb_009545_030--Hb_004324_030 Hb_009545_030--Hb_007134_030 Hb_007138_030 Hb_007138_030 Hb_009545_030--Hb_007138_030 Hb_007134_030--Hb_008143_040 Hb_187959_010 Hb_187959_010 Hb_007134_030--Hb_187959_010 Hb_004032_110 Hb_004032_110 Hb_007134_030--Hb_004032_110 Hb_001439_010 Hb_001439_010 Hb_007134_030--Hb_001439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.094121 4.28104 2.03087 12.813 0 0.105907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.578254 0.852464 0.306894 10.0018 6.24106

CAGE analysis