Hb_001159_200

Information

Type -
Description -
Location Contig1159: 182611-186552
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08140g
description POPTRDRAFT_846424; hypothetical protein
nr
ID XP_012087076.1
description PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
swissprot
ID Q8GW78
description Clp protease-related protein At4g12060, chloroplastic OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1
trembl
ID A0A067JRV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20734 PE=4 SV=1
Gene Ontology
ID GO:0019538
description clp protease-related protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04786: 183543-186639 , PASA_asmbl_04787: 183543-184482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_200 0.0 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
2 Hb_001369_400 0.1026381314 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
3 Hb_000281_230 0.112307617 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
4 Hb_002876_370 0.1183890459 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
5 Hb_000788_080 0.1218864683 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
6 Hb_000318_490 0.1226996143 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
7 Hb_001863_420 0.1255649663 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
8 Hb_003086_060 0.128327735 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
9 Hb_000103_550 0.1287247428 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
10 Hb_034585_050 0.1299762271 - - -
11 Hb_003043_120 0.1343265784 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004545_130 0.137630288 - - uncharacterized protein LOC100305465 [Glycine max]
13 Hb_006738_010 0.1384211304 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
14 Hb_000260_200 0.1400452143 - - -
15 Hb_000819_070 0.1413210961 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
16 Hb_000163_210 0.1429950504 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
17 Hb_062135_020 0.1435333058 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
18 Hb_002918_140 0.1440062462 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
19 Hb_002759_240 0.1443032684 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
20 Hb_002518_290 0.1446869844 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]

Gene co-expression network

sample Hb_001159_200 Hb_001159_200 Hb_001369_400 Hb_001369_400 Hb_001159_200--Hb_001369_400 Hb_000281_230 Hb_000281_230 Hb_001159_200--Hb_000281_230 Hb_002876_370 Hb_002876_370 Hb_001159_200--Hb_002876_370 Hb_000788_080 Hb_000788_080 Hb_001159_200--Hb_000788_080 Hb_000318_490 Hb_000318_490 Hb_001159_200--Hb_000318_490 Hb_001863_420 Hb_001863_420 Hb_001159_200--Hb_001863_420 Hb_001369_400--Hb_002876_370 Hb_000819_070 Hb_000819_070 Hb_001369_400--Hb_000819_070 Hb_001369_400--Hb_000318_490 Hb_000976_250 Hb_000976_250 Hb_001369_400--Hb_000976_250 Hb_034585_050 Hb_034585_050 Hb_001369_400--Hb_034585_050 Hb_004635_060 Hb_004635_060 Hb_000281_230--Hb_004635_060 Hb_000281_230--Hb_001369_400 Hb_000281_230--Hb_000819_070 Hb_000281_230--Hb_000318_490 Hb_004223_260 Hb_004223_260 Hb_000281_230--Hb_004223_260 Hb_002876_370--Hb_000318_490 Hb_002876_370--Hb_000976_250 Hb_003086_060 Hb_003086_060 Hb_002876_370--Hb_003086_060 Hb_000123_160 Hb_000123_160 Hb_002876_370--Hb_000123_160 Hb_003095_070 Hb_003095_070 Hb_000788_080--Hb_003095_070 Hb_005000_160 Hb_005000_160 Hb_000788_080--Hb_005000_160 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_000613_160 Hb_000613_160 Hb_000788_080--Hb_000613_160 Hb_009838_040 Hb_009838_040 Hb_000788_080--Hb_009838_040 Hb_000318_490--Hb_000123_160 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_002918_140 Hb_002918_140 Hb_001863_420--Hb_002918_140 Hb_001386_050 Hb_001386_050 Hb_001863_420--Hb_001386_050 Hb_002105_030 Hb_002105_030 Hb_001863_420--Hb_002105_030 Hb_001863_420--Hb_001369_400 Hb_001863_420--Hb_003086_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17705 0.0874353 0.282438 0.46292 0.718429 1.04736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.82559 11.392 6.47704 1.45098 1.50653

CAGE analysis