Hb_001159_220

Information

Type -
Description -
Location Contig1159: 202221-203105
Sequence    

Annotation

kegg
ID rcu:RCOM_1681380
description ESC, putative
nr
ID XP_002509637.1
description ESC, putative [Ricinus communis]
swissprot
ID O49662
description AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana GN=AHL24 PE=2 SV=1
trembl
ID B9RBV3
description ESC, putative OS=Ricinus communis GN=RCOM_1681380 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04790: 202991-203169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_220 0.0 - - ESC, putative [Ricinus communis]
2 Hb_011849_030 0.0820759337 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005306_030 0.1096717356 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
4 Hb_001649_050 0.1243148796 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
5 Hb_000103_460 0.126290328 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
6 Hb_004316_080 0.1301050562 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
7 Hb_000656_120 0.1384717556 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
8 Hb_004607_020 0.1429786411 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
9 Hb_002995_010 0.146415821 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
10 Hb_068804_070 0.151445814 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
11 Hb_000417_140 0.1550292474 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
12 Hb_007951_020 0.1574931388 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
13 Hb_001366_380 0.1581416336 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
14 Hb_006316_090 0.1589072169 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_005743_010 0.1606198148 - - RING/U-box superfamily protein, putative [Theobroma cacao]
16 Hb_009339_040 0.1616029697 - - conserved hypothetical protein [Ricinus communis]
17 Hb_027337_010 0.1617851588 - - Potassium transporter, putative [Ricinus communis]
18 Hb_000567_060 0.1628623038 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
19 Hb_000018_090 0.1647972857 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_006294_030 0.1665400346 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001159_220 Hb_001159_220 Hb_011849_030 Hb_011849_030 Hb_001159_220--Hb_011849_030 Hb_005306_030 Hb_005306_030 Hb_001159_220--Hb_005306_030 Hb_001649_050 Hb_001649_050 Hb_001159_220--Hb_001649_050 Hb_000103_460 Hb_000103_460 Hb_001159_220--Hb_000103_460 Hb_004316_080 Hb_004316_080 Hb_001159_220--Hb_004316_080 Hb_000656_120 Hb_000656_120 Hb_001159_220--Hb_000656_120 Hb_011849_030--Hb_001649_050 Hb_011849_030--Hb_005306_030 Hb_004607_020 Hb_004607_020 Hb_011849_030--Hb_004607_020 Hb_027337_010 Hb_027337_010 Hb_011849_030--Hb_027337_010 Hb_002995_010 Hb_002995_010 Hb_011849_030--Hb_002995_010 Hb_005306_030--Hb_001649_050 Hb_001366_380 Hb_001366_380 Hb_005306_030--Hb_001366_380 Hb_008143_050 Hb_008143_050 Hb_005306_030--Hb_008143_050 Hb_005306_030--Hb_000103_460 Hb_005306_030--Hb_004607_020 Hb_001649_050--Hb_004607_020 Hb_001649_050--Hb_001366_380 Hb_001649_050--Hb_004316_080 Hb_000260_670 Hb_000260_670 Hb_001649_050--Hb_000260_670 Hb_006316_090 Hb_006316_090 Hb_000103_460--Hb_006316_090 Hb_000358_010 Hb_000358_010 Hb_000103_460--Hb_000358_010 Hb_001076_010 Hb_001076_010 Hb_000103_460--Hb_001076_010 Hb_001369_550 Hb_001369_550 Hb_000103_460--Hb_001369_550 Hb_002874_010 Hb_002874_010 Hb_000103_460--Hb_002874_010 Hb_004316_080--Hb_006316_090 Hb_004316_080--Hb_004607_020 Hb_007951_020 Hb_007951_020 Hb_004316_080--Hb_007951_020 Hb_005743_010 Hb_005743_010 Hb_004316_080--Hb_005743_010 Hb_001476_030 Hb_001476_030 Hb_004316_080--Hb_001476_030 Hb_000483_050 Hb_000483_050 Hb_000656_120--Hb_000483_050 Hb_150745_010 Hb_150745_010 Hb_000656_120--Hb_150745_010 Hb_002045_260 Hb_002045_260 Hb_000656_120--Hb_002045_260 Hb_000656_120--Hb_011849_030 Hb_001005_170 Hb_001005_170 Hb_000656_120--Hb_001005_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.228995 1.46808 0.446539 0.0241588 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.450392 0.0942471

CAGE analysis