Hb_001160_030

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig1160: 12147-15252
Sequence    

Annotation

kegg
ID rcu:RCOM_0706540
description DNA binding protein, putative
nr
ID XP_006371893.1
description hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
swissprot
ID Q9M2B4
description PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1
trembl
ID U5FFQ7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s05470g PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001160_030 0.0 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
2 Hb_003376_030 0.0580352501 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
3 Hb_002097_060 0.0740937699 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_001616_060 0.0799484544 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
5 Hb_001575_020 0.0835527395 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000146_020 0.0861508964 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
7 Hb_001616_030 0.0873492232 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
8 Hb_003455_040 0.0920827205 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
9 Hb_002027_210 0.0924098008 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
10 Hb_000069_100 0.0926943558 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003579_030 0.0928043761 - - phosphatase 2C family protein [Populus trichocarpa]
12 Hb_007382_150 0.0943134543 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
13 Hb_002876_120 0.0944133139 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
14 Hb_148200_010 0.0948328334 - - hypothetical protein 33 [Hevea brasiliensis]
15 Hb_000329_330 0.0950971965 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
16 Hb_029866_020 0.0959804166 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
17 Hb_000347_410 0.0962162621 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
18 Hb_001300_270 0.0989316878 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
19 Hb_000567_170 0.0990042258 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
20 Hb_005432_030 0.1000407167 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]

Gene co-expression network

sample Hb_001160_030 Hb_001160_030 Hb_003376_030 Hb_003376_030 Hb_001160_030--Hb_003376_030 Hb_002097_060 Hb_002097_060 Hb_001160_030--Hb_002097_060 Hb_001616_060 Hb_001616_060 Hb_001160_030--Hb_001616_060 Hb_001575_020 Hb_001575_020 Hb_001160_030--Hb_001575_020 Hb_000146_020 Hb_000146_020 Hb_001160_030--Hb_000146_020 Hb_001616_030 Hb_001616_030 Hb_001160_030--Hb_001616_030 Hb_003455_040 Hb_003455_040 Hb_003376_030--Hb_003455_040 Hb_003376_030--Hb_002097_060 Hb_148200_010 Hb_148200_010 Hb_003376_030--Hb_148200_010 Hb_003376_030--Hb_000146_020 Hb_002027_210 Hb_002027_210 Hb_003376_030--Hb_002027_210 Hb_000069_100 Hb_000069_100 Hb_002097_060--Hb_000069_100 Hb_002097_060--Hb_003455_040 Hb_006573_220 Hb_006573_220 Hb_002097_060--Hb_006573_220 Hb_002097_060--Hb_001575_020 Hb_002097_060--Hb_148200_010 Hb_001616_060--Hb_001575_020 Hb_001616_060--Hb_000069_100 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001616_060--Hb_007382_150 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_003929_120 Hb_003929_120 Hb_001575_020--Hb_003929_120 Hb_001575_020--Hb_000069_100 Hb_000061_300 Hb_000061_300 Hb_001575_020--Hb_000061_300 Hb_000347_410 Hb_000347_410 Hb_000146_020--Hb_000347_410 Hb_000834_270 Hb_000834_270 Hb_000146_020--Hb_000834_270 Hb_007943_090 Hb_007943_090 Hb_000146_020--Hb_007943_090 Hb_000146_020--Hb_002027_210 Hb_000146_020--Hb_008289_060 Hb_000563_250 Hb_000563_250 Hb_001616_030--Hb_000563_250 Hb_000240_090 Hb_000240_090 Hb_001616_030--Hb_000240_090 Hb_003579_030 Hb_003579_030 Hb_001616_030--Hb_003579_030 Hb_001616_030--Hb_003376_030 Hb_153112_030 Hb_153112_030 Hb_001616_030--Hb_153112_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3904 5.49971 7.27402 3.96398 9.3936 13.6132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9401 36.0305 31.017 7.09004 7.30655

CAGE analysis