Hb_001160_120

Information

Type -
Description -
Location Contig1160: 60856-61584
Sequence    

Annotation

kegg
ID rcu:RCOM_1168980
description hypothetical protein
nr
ID XP_002528827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SS58
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1168980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001160_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001050_010 0.0833714278 - - Advillin [Gossypium arboreum]
3 Hb_001040_040 0.0938584612 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
4 Hb_011915_010 0.0964614065 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
5 Hb_001001_020 0.0978246298 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
6 Hb_011609_170 0.1014035309 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
7 Hb_002783_120 0.1039658413 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
8 Hb_005695_060 0.104646931 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
9 Hb_000453_190 0.1055521566 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
10 Hb_000297_110 0.1076196044 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
11 Hb_018790_070 0.1076335803 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
12 Hb_009252_100 0.1100384514 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
13 Hb_000345_530 0.1111256719 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
14 Hb_152453_010 0.1122894564 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
15 Hb_001102_080 0.1147027615 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
16 Hb_006452_160 0.1149617666 - - structural constituent of ribosome, putative [Ricinus communis]
17 Hb_035318_010 0.115864155 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
18 Hb_008556_030 0.116397612 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
19 Hb_001882_040 0.1165991004 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
20 Hb_002942_050 0.1169250644 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001160_120 Hb_001160_120 Hb_001050_010 Hb_001050_010 Hb_001160_120--Hb_001050_010 Hb_001040_040 Hb_001040_040 Hb_001160_120--Hb_001040_040 Hb_011915_010 Hb_011915_010 Hb_001160_120--Hb_011915_010 Hb_001001_020 Hb_001001_020 Hb_001160_120--Hb_001001_020 Hb_011609_170 Hb_011609_170 Hb_001160_120--Hb_011609_170 Hb_002783_120 Hb_002783_120 Hb_001160_120--Hb_002783_120 Hb_000868_060 Hb_000868_060 Hb_001050_010--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_001050_010--Hb_011915_010 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_001050_010--Hb_011609_170 Hb_000395_020 Hb_000395_020 Hb_001050_010--Hb_000395_020 Hb_001040_040--Hb_000395_020 Hb_001040_040--Hb_011915_010 Hb_001040_040--Hb_000868_060 Hb_000923_040 Hb_000923_040 Hb_001040_040--Hb_000923_040 Hb_009252_100 Hb_009252_100 Hb_001040_040--Hb_009252_100 Hb_030827_030 Hb_030827_030 Hb_001040_040--Hb_030827_030 Hb_002249_160 Hb_002249_160 Hb_011915_010--Hb_002249_160 Hb_011915_010--Hb_011609_170 Hb_007044_040 Hb_007044_040 Hb_011915_010--Hb_007044_040 Hb_001198_150 Hb_001198_150 Hb_011915_010--Hb_001198_150 Hb_005695_060 Hb_005695_060 Hb_001001_020--Hb_005695_060 Hb_000976_080 Hb_000976_080 Hb_001001_020--Hb_000976_080 Hb_001001_020--Hb_002783_120 Hb_000453_190 Hb_000453_190 Hb_001001_020--Hb_000453_190 Hb_018790_070 Hb_018790_070 Hb_001001_020--Hb_018790_070 Hb_008725_130 Hb_008725_130 Hb_011609_170--Hb_008725_130 Hb_005408_020 Hb_005408_020 Hb_011609_170--Hb_005408_020 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_011609_170--Hb_000868_060 Hb_001163_120 Hb_001163_120 Hb_011609_170--Hb_001163_120 Hb_002783_120--Hb_005695_060 Hb_002783_120--Hb_000453_190 Hb_002783_120--Hb_000976_080 Hb_002783_120--Hb_011915_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40771 3.05817 5.80459 2.39889 6.49335 5.22006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30731 1.81288 2.45403 1.8938 1.44576

CAGE analysis