Hb_001163_050

Information

Type -
Description -
Location Contig1163: 48229-54196
Sequence    

Annotation

kegg
ID rcu:RCOM_0792890
description histone deacetylase 1, 2, 3, putative
nr
ID XP_012075872.1
description PREDICTED: histone deacetylase 9 [Jatropha curcas]
swissprot
ID Q8H0W2
description Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=1 SV=1
trembl
ID A0A067KET5
description Histone deacetylase OS=Jatropha curcas GN=JCGZ_10911 PE=3 SV=1
Gene Ontology
ID GO:0004407
description histone deacetylase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05023: 48259-54123
cDNA
(Sanger)
(ID:Location)		 005_G07r.ab1: 45789-47616

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_050 0.0 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
2 Hb_000331_550 0.0450339138 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
3 Hb_003125_120 0.0494466897 - - PREDICTED: TITAN-like protein [Jatropha curcas]
4 Hb_000373_070 0.0524265912 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
5 Hb_001142_030 0.0536060264 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
6 Hb_003001_080 0.0561249817 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
7 Hb_008453_140 0.058365683 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
8 Hb_011995_010 0.0596115135 - - dc50, putative [Ricinus communis]
9 Hb_000563_320 0.0607364061 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
10 Hb_002013_020 0.0645003959 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
11 Hb_002740_030 0.0645659975 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
12 Hb_000757_060 0.0646637465 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
13 Hb_156279_020 0.0652139454 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
14 Hb_000403_050 0.0656173326 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
15 Hb_120410_010 0.066237879 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
16 Hb_000416_040 0.0665295933 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
17 Hb_000580_180 0.0667792235 - - conserved hypothetical protein [Ricinus communis]
18 Hb_032202_140 0.0668931663 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
19 Hb_005271_220 0.0674023056 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
20 Hb_003938_090 0.0679995093 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001163_050 Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_008453_140 Hb_008453_140 Hb_001163_050--Hb_008453_140 Hb_000331_550--Hb_000373_070 Hb_156279_020 Hb_156279_020 Hb_000331_550--Hb_156279_020 Hb_011995_010 Hb_011995_010 Hb_000331_550--Hb_011995_010 Hb_015934_040 Hb_015934_040 Hb_000331_550--Hb_015934_040 Hb_002754_010 Hb_002754_010 Hb_000331_550--Hb_002754_010 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_000334_280 Hb_000334_280 Hb_003125_120--Hb_000334_280 Hb_000403_050 Hb_000403_050 Hb_003125_120--Hb_000403_050 Hb_003125_120--Hb_008453_140 Hb_003125_120--Hb_001142_030 Hb_003151_040 Hb_003151_040 Hb_000373_070--Hb_003151_040 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_005846_040 Hb_005846_040 Hb_000373_070--Hb_005846_040 Hb_002078_350 Hb_002078_350 Hb_000373_070--Hb_002078_350 Hb_002740_030 Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_001142_030--Hb_008453_140 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_120410_010 Hb_120410_010 Hb_001142_030--Hb_120410_010 Hb_000340_400 Hb_000340_400 Hb_003001_080--Hb_000340_400 Hb_152175_010 Hb_152175_010 Hb_003001_080--Hb_152175_010 Hb_003001_080--Hb_008453_140 Hb_004837_180 Hb_004837_180 Hb_003001_080--Hb_004837_180 Hb_032202_140 Hb_032202_140 Hb_003001_080--Hb_032202_140 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8786 18.1579 20.1911 16.0218 19.1405 19.3361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2367 29.6816 21.2712 15.7139 16.0037

CAGE analysis