Hb_001163_100

Information

Type -
Description -
Location Contig1163: 92585-97105
Sequence    

Annotation

kegg
ID rcu:RCOM_0792860
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_002529073.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q9LFA2
description Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1
trembl
ID B9SSV4
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_0792860 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase d6pkl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05027: 92585-95644 , PASA_asmbl_05028: 95720-96865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_100 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_000260_010 0.0515883336 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
3 Hb_000340_230 0.0591778121 - - synapse-associated protein, putative [Ricinus communis]
4 Hb_004672_040 0.0595696597 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
5 Hb_164010_030 0.0710768919 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
6 Hb_000009_560 0.0744675514 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
7 Hb_001377_490 0.0758329608 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
8 Hb_000406_140 0.0758878104 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000192_080 0.0784077154 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
10 Hb_001789_150 0.0792174723 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
11 Hb_001912_110 0.0813715285 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_027380_220 0.0816252257 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
13 Hb_007416_090 0.0816663861 - - UDP-sugar transporter, putative [Ricinus communis]
14 Hb_000497_300 0.0817471922 - - peroxisomal membrane protein [Hevea brasiliensis]
15 Hb_000913_020 0.0817506177 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_005291_050 0.081789467 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
17 Hb_065525_040 0.0818446976 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
18 Hb_000665_060 0.0831933013 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
19 Hb_003025_100 0.0834558997 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
20 Hb_000207_330 0.0841877973 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001163_100 Hb_001163_100 Hb_000260_010 Hb_000260_010 Hb_001163_100--Hb_000260_010 Hb_000340_230 Hb_000340_230 Hb_001163_100--Hb_000340_230 Hb_004672_040 Hb_004672_040 Hb_001163_100--Hb_004672_040 Hb_164010_030 Hb_164010_030 Hb_001163_100--Hb_164010_030 Hb_000009_560 Hb_000009_560 Hb_001163_100--Hb_000009_560 Hb_001377_490 Hb_001377_490 Hb_001163_100--Hb_001377_490 Hb_027380_220 Hb_027380_220 Hb_000260_010--Hb_027380_220 Hb_002809_050 Hb_002809_050 Hb_000260_010--Hb_002809_050 Hb_001912_110 Hb_001912_110 Hb_000260_010--Hb_001912_110 Hb_000260_010--Hb_001377_490 Hb_000260_010--Hb_164010_030 Hb_004052_170 Hb_004052_170 Hb_000340_230--Hb_004052_170 Hb_000913_020 Hb_000913_020 Hb_000340_230--Hb_000913_020 Hb_029510_050 Hb_029510_050 Hb_000340_230--Hb_029510_050 Hb_002495_080 Hb_002495_080 Hb_000340_230--Hb_002495_080 Hb_005686_090 Hb_005686_090 Hb_000340_230--Hb_005686_090 Hb_000050_190 Hb_000050_190 Hb_004672_040--Hb_000050_190 Hb_003168_110 Hb_003168_110 Hb_004672_040--Hb_003168_110 Hb_000207_330 Hb_000207_330 Hb_004672_040--Hb_000207_330 Hb_000192_080 Hb_000192_080 Hb_004672_040--Hb_000192_080 Hb_006915_030 Hb_006915_030 Hb_004672_040--Hb_006915_030 Hb_000497_300 Hb_000497_300 Hb_164010_030--Hb_000497_300 Hb_000116_260 Hb_000116_260 Hb_164010_030--Hb_000116_260 Hb_164010_030--Hb_001377_490 Hb_001014_030 Hb_001014_030 Hb_164010_030--Hb_001014_030 Hb_000009_560--Hb_000192_080 Hb_000009_560--Hb_001377_490 Hb_015934_040 Hb_015934_040 Hb_000009_560--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000009_560--Hb_001538_130 Hb_000009_560--Hb_003168_110 Hb_000083_120 Hb_000083_120 Hb_000009_560--Hb_000083_120 Hb_000185_040 Hb_000185_040 Hb_001377_490--Hb_000185_040 Hb_000003_590 Hb_000003_590 Hb_001377_490--Hb_000003_590 Hb_000003_250 Hb_000003_250 Hb_001377_490--Hb_000003_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.09889 8.06332 4.66178 13.667 7.3398 9.10921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.19624 8.40553 13.9749 7.86397 11.3618

CAGE analysis