Hb_001163_120

Information

Type -
Description -
Location Contig1163: 110193-117811
Sequence    

Annotation

kegg
ID rcu:RCOM_0792840
description WD-repeat protein, putative (EC:5.2.1.8)
nr
ID XP_002529071.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q8W4D0
description Peptidyl-prolyl cis-trans isomerase CYP71 OS=Arabidopsis thaliana GN=CYP71 PE=1 SV=1
trembl
ID B9SSV2
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0792840 PE=4 SV=1
Gene Ontology
ID GO:0003755
description peptidylprolyl isomerase domain and wd repeat-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05031: 110344-117723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_120 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_011310_130 0.0688148171 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
3 Hb_000031_280 0.0745924842 - - -
4 Hb_008556_030 0.0770380849 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
5 Hb_002942_050 0.0770716952 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
6 Hb_011609_170 0.0775560058 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
7 Hb_012404_070 0.0871776125 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
8 Hb_022693_030 0.0909065721 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
9 Hb_000042_340 0.0941919876 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
10 Hb_000599_080 0.0948353857 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
11 Hb_003549_090 0.0957691238 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
12 Hb_001882_040 0.0969679587 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
13 Hb_016734_090 0.1014067885 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
14 Hb_002681_170 0.1026957321 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_080147_040 0.1033266904 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
16 Hb_000336_270 0.1033474489 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
17 Hb_006452_160 0.1033507046 - - structural constituent of ribosome, putative [Ricinus communis]
18 Hb_028872_120 0.1037357889 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
19 Hb_003680_230 0.10395973 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
20 Hb_000139_230 0.1041371231 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]

Gene co-expression network

sample Hb_001163_120 Hb_001163_120 Hb_011310_130 Hb_011310_130 Hb_001163_120--Hb_011310_130 Hb_000031_280 Hb_000031_280 Hb_001163_120--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_001163_120--Hb_008556_030 Hb_002942_050 Hb_002942_050 Hb_001163_120--Hb_002942_050 Hb_011609_170 Hb_011609_170 Hb_001163_120--Hb_011609_170 Hb_012404_070 Hb_012404_070 Hb_001163_120--Hb_012404_070 Hb_011310_130--Hb_002942_050 Hb_003549_090 Hb_003549_090 Hb_011310_130--Hb_003549_090 Hb_001635_040 Hb_001635_040 Hb_011310_130--Hb_001635_040 Hb_000777_050 Hb_000777_050 Hb_011310_130--Hb_000777_050 Hb_011310_210 Hb_011310_210 Hb_011310_130--Hb_011310_210 Hb_000031_280--Hb_008556_030 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_002681_170 Hb_002681_170 Hb_000031_280--Hb_002681_170 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_001418_040 Hb_001418_040 Hb_000031_280--Hb_001418_040 Hb_002836_140 Hb_002836_140 Hb_008556_030--Hb_002836_140 Hb_008556_030--Hb_001418_040 Hb_000797_050 Hb_000797_050 Hb_008556_030--Hb_000797_050 Hb_008556_030--Hb_002942_050 Hb_002093_030 Hb_002093_030 Hb_008556_030--Hb_002093_030 Hb_002942_050--Hb_000777_050 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_002942_050--Hb_011310_210 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180 Hb_008725_130 Hb_008725_130 Hb_011609_170--Hb_008725_130 Hb_005408_020 Hb_005408_020 Hb_011609_170--Hb_005408_020 Hb_011609_170--Hb_002942_050 Hb_000868_060 Hb_000868_060 Hb_011609_170--Hb_000868_060 Hb_001050_010 Hb_001050_010 Hb_011609_170--Hb_001050_010 Hb_003436_050 Hb_003436_050 Hb_012404_070--Hb_003436_050 Hb_012404_070--Hb_005408_020 Hb_008246_030 Hb_008246_030 Hb_012404_070--Hb_008246_030 Hb_002249_120 Hb_002249_120 Hb_012404_070--Hb_002249_120 Hb_012404_070--Hb_011609_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.6423 15.2935 20.5373 12.6185 20.2269 28.4457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33488 7.65088 7.99197 6.73252 11.4079

CAGE analysis