Hb_001168_020

Information

Type -
Description -
Location Contig1168: 15528-23968
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07080g
description POPTRDRAFT_821380; hypothetical protein
nr
ID XP_012076010.1
description PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
swissprot
ID Q54FQ8
description Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1
trembl
ID A0A067KEA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11111 PE=4 SV=1
Gene Ontology
ID GO:0016779
description translation initiation factor eif-2b subunit gamma

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05212: 2697-17379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001168_020 0.0 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
2 Hb_000310_090 0.0581008785 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
3 Hb_002289_080 0.0634166263 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
4 Hb_000696_330 0.068050484 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
5 Hb_000078_120 0.0785365197 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
6 Hb_003777_320 0.0820509427 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
7 Hb_000167_080 0.0863927356 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
8 Hb_000429_150 0.0906093282 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
9 Hb_025194_100 0.0914239282 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
10 Hb_001279_150 0.0920772504 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
11 Hb_002811_180 0.0925590786 - - conserved hypothetical protein [Ricinus communis]
12 Hb_144528_010 0.0926401779 - - type II inositol 5-phosphatase, putative [Ricinus communis]
13 Hb_010964_040 0.0929285061 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
14 Hb_086085_020 0.0930337451 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
15 Hb_000421_220 0.0956144093 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
16 Hb_005489_060 0.0958561652 - - Anamorsin, putative [Ricinus communis]
17 Hb_000621_010 0.0960219981 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
18 Hb_011344_120 0.0965882563 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
19 Hb_001252_130 0.0965986679 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
20 Hb_001314_050 0.0968832258 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_001168_020 Hb_001168_020 Hb_000310_090 Hb_000310_090 Hb_001168_020--Hb_000310_090 Hb_002289_080 Hb_002289_080 Hb_001168_020--Hb_002289_080 Hb_000696_330 Hb_000696_330 Hb_001168_020--Hb_000696_330 Hb_000078_120 Hb_000078_120 Hb_001168_020--Hb_000078_120 Hb_003777_320 Hb_003777_320 Hb_001168_020--Hb_003777_320 Hb_000167_080 Hb_000167_080 Hb_001168_020--Hb_000167_080 Hb_001189_070 Hb_001189_070 Hb_000310_090--Hb_001189_070 Hb_025098_010 Hb_025098_010 Hb_000310_090--Hb_025098_010 Hb_000310_090--Hb_002289_080 Hb_086085_020 Hb_086085_020 Hb_000310_090--Hb_086085_020 Hb_001314_050 Hb_001314_050 Hb_000310_090--Hb_001314_050 Hb_005144_050 Hb_005144_050 Hb_002289_080--Hb_005144_050 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_002289_080--Hb_025098_010 Hb_000696_330--Hb_000078_120 Hb_011386_010 Hb_011386_010 Hb_000696_330--Hb_011386_010 Hb_004143_060 Hb_004143_060 Hb_000696_330--Hb_004143_060 Hb_002078_350 Hb_002078_350 Hb_000696_330--Hb_002078_350 Hb_000331_260 Hb_000331_260 Hb_000696_330--Hb_000331_260 Hb_006831_140 Hb_006831_140 Hb_000078_120--Hb_006831_140 Hb_002994_030 Hb_002994_030 Hb_000078_120--Hb_002994_030 Hb_000078_120--Hb_002078_350 Hb_000078_120--Hb_011386_010 Hb_000708_030 Hb_000708_030 Hb_000078_120--Hb_000708_030 Hb_005188_080 Hb_005188_080 Hb_003777_320--Hb_005188_080 Hb_003847_030 Hb_003847_030 Hb_003777_320--Hb_003847_030 Hb_007881_030 Hb_007881_030 Hb_003777_320--Hb_007881_030 Hb_003777_320--Hb_000696_330 Hb_000504_070 Hb_000504_070 Hb_003777_320--Hb_000504_070 Hb_000453_160 Hb_000453_160 Hb_000167_080--Hb_000453_160 Hb_154948_040 Hb_154948_040 Hb_000167_080--Hb_154948_040 Hb_000167_080--Hb_086085_020 Hb_001252_130 Hb_001252_130 Hb_000167_080--Hb_001252_130 Hb_001287_080 Hb_001287_080 Hb_000167_080--Hb_001287_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.31179 5.02074 4.20839 10.5257 4.60579 10.4727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.5499 11.1471 5.96069 6.77871 7.89578

CAGE analysis