Hb_001168_030

Information

Type -
Description -
Location Contig1168: 24864-27854
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07100g
description POPTRDRAFT_804416; cyclin b1-type family protein
nr
ID XP_012076013.1
description PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
swissprot
ID P25011
description G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1
trembl
ID A0A067KRV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11114 PE=3 SV=1
Gene Ontology
ID GO:0005634
description g2 mitotic-specific cyclin s13-7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05213: 25906-27929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001168_030 0.0 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
2 Hb_007245_030 0.0662533173 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004963_020 0.0700775785 - - PREDICTED: patellin-4 [Populus euphratica]
4 Hb_000316_070 0.076599831 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
5 Hb_005914_100 0.0769519683 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000614_200 0.0784177345 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
7 Hb_003776_050 0.0793295077 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
8 Hb_001699_070 0.080799483 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003398_050 0.0840400674 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
10 Hb_004097_030 0.0879454149 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
11 Hb_002928_150 0.0891630551 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
12 Hb_004032_390 0.0902702914 - - CDK, putative [Ricinus communis]
13 Hb_004635_020 0.0905159323 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
14 Hb_080952_060 0.0929992036 - - PREDICTED: patellin-4 [Populus euphratica]
15 Hb_000069_510 0.0941592177 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
16 Hb_001864_040 0.0979626152 - - PREDICTED: kinesin-1 [Jatropha curcas]
17 Hb_011849_010 0.098686353 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
18 Hb_000441_210 0.0990493642 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
19 Hb_004102_090 0.0990539346 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
20 Hb_003018_210 0.0991608951 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_001168_030 Hb_001168_030 Hb_007245_030 Hb_007245_030 Hb_001168_030--Hb_007245_030 Hb_004963_020 Hb_004963_020 Hb_001168_030--Hb_004963_020 Hb_000316_070 Hb_000316_070 Hb_001168_030--Hb_000316_070 Hb_005914_100 Hb_005914_100 Hb_001168_030--Hb_005914_100 Hb_000614_200 Hb_000614_200 Hb_001168_030--Hb_000614_200 Hb_003776_050 Hb_003776_050 Hb_001168_030--Hb_003776_050 Hb_007245_030--Hb_005914_100 Hb_007245_030--Hb_000614_200 Hb_007245_030--Hb_000316_070 Hb_002928_150 Hb_002928_150 Hb_007245_030--Hb_002928_150 Hb_004225_160 Hb_004225_160 Hb_007245_030--Hb_004225_160 Hb_002473_030 Hb_002473_030 Hb_004963_020--Hb_002473_030 Hb_004963_020--Hb_000316_070 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_002837_030 Hb_002837_030 Hb_004963_020--Hb_002837_030 Hb_005649_050 Hb_005649_050 Hb_004963_020--Hb_005649_050 Hb_011849_010 Hb_011849_010 Hb_000316_070--Hb_011849_010 Hb_004635_020 Hb_004635_020 Hb_000316_070--Hb_004635_020 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_004097_030 Hb_004097_030 Hb_005914_100--Hb_004097_030 Hb_005914_100--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_005914_100--Hb_004174_030 Hb_003398_050 Hb_003398_050 Hb_005914_100--Hb_003398_050 Hb_056196_020 Hb_056196_020 Hb_005914_100--Hb_056196_020 Hb_000614_200--Hb_003776_050 Hb_000614_200--Hb_011849_010 Hb_002374_090 Hb_002374_090 Hb_000614_200--Hb_002374_090 Hb_119044_040 Hb_119044_040 Hb_000614_200--Hb_119044_040 Hb_000614_200--Hb_003398_050 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_003776_050--Hb_119044_040 Hb_003776_050--Hb_003398_050 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.385737 1.19204 55.223 22.8483 0.359669 0.268582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.110776 0.125286 1.91679 1.95368

CAGE analysis