Hb_001168_050

Information

Type -
Description -
Location Contig1168: 31570-36097
Sequence    

Annotation

kegg
ID pop:POPTR_0007s03190g
description POPTRDRAFT_819740; hypothetical protein
nr
ID XP_002310485.2
description hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
swissprot
ID Q8H183
description Beta-ureidopropionase OS=Arabidopsis thaliana GN=PYD3 PE=1 SV=1
trembl
ID B9HEB2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03190g PE=4 SV=2
Gene Ontology
ID GO:0005829
description beta-ureidopropionase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05217: 32014-32332 , PASA_asmbl_05219: 34782-35122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001168_050 0.0 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
2 Hb_005147_030 0.0923761524 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
3 Hb_002471_290 0.0967149012 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
4 Hb_009079_030 0.1119199243 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
5 Hb_011671_270 0.1130466879 - - phosphofructokinase [Hevea brasiliensis]
6 Hb_001731_030 0.1176158715 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
7 Hb_004586_350 0.1203444305 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
8 Hb_179924_010 0.1211491379 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
9 Hb_011224_160 0.1218519256 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
10 Hb_002600_150 0.1240621889 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
11 Hb_000106_120 0.1263045418 - - hypothetical protein glysoja_007050 [Glycine soja]
12 Hb_007380_060 0.1265335848 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
13 Hb_001301_150 0.1265800835 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
14 Hb_003117_030 0.1272511589 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
15 Hb_000352_310 0.1276805547 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
16 Hb_011674_020 0.1276907065 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
17 Hb_012733_030 0.127845383 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
18 Hb_002400_410 0.1283048905 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
19 Hb_001999_310 0.1285289885 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
20 Hb_001269_650 0.1287212038 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001168_050 Hb_001168_050 Hb_005147_030 Hb_005147_030 Hb_001168_050--Hb_005147_030 Hb_002471_290 Hb_002471_290 Hb_001168_050--Hb_002471_290 Hb_009079_030 Hb_009079_030 Hb_001168_050--Hb_009079_030 Hb_011671_270 Hb_011671_270 Hb_001168_050--Hb_011671_270 Hb_001731_030 Hb_001731_030 Hb_001168_050--Hb_001731_030 Hb_004586_350 Hb_004586_350 Hb_001168_050--Hb_004586_350 Hb_005147_030--Hb_002471_290 Hb_001473_180 Hb_001473_180 Hb_005147_030--Hb_001473_180 Hb_002600_150 Hb_002600_150 Hb_005147_030--Hb_002600_150 Hb_005147_030--Hb_009079_030 Hb_000329_060 Hb_000329_060 Hb_005147_030--Hb_000329_060 Hb_002044_150 Hb_002044_150 Hb_005147_030--Hb_002044_150 Hb_002471_290--Hb_009079_030 Hb_002400_410 Hb_002400_410 Hb_002471_290--Hb_002400_410 Hb_003294_070 Hb_003294_070 Hb_002471_290--Hb_003294_070 Hb_000556_120 Hb_000556_120 Hb_002471_290--Hb_000556_120 Hb_003647_130 Hb_003647_130 Hb_002471_290--Hb_003647_130 Hb_009079_030--Hb_003647_130 Hb_006198_120 Hb_006198_120 Hb_009079_030--Hb_006198_120 Hb_009079_030--Hb_003294_070 Hb_003913_070 Hb_003913_070 Hb_009079_030--Hb_003913_070 Hb_009079_030--Hb_001473_180 Hb_000565_040 Hb_000565_040 Hb_011671_270--Hb_000565_040 Hb_000510_340 Hb_000510_340 Hb_011671_270--Hb_000510_340 Hb_028960_030 Hb_028960_030 Hb_011671_270--Hb_028960_030 Hb_003528_050 Hb_003528_050 Hb_011671_270--Hb_003528_050 Hb_000352_310 Hb_000352_310 Hb_011671_270--Hb_000352_310 Hb_011224_160 Hb_011224_160 Hb_011671_270--Hb_011224_160 Hb_001493_150 Hb_001493_150 Hb_001731_030--Hb_001493_150 Hb_000808_170 Hb_000808_170 Hb_001731_030--Hb_000808_170 Hb_001731_030--Hb_028960_030 Hb_073171_100 Hb_073171_100 Hb_001731_030--Hb_073171_100 Hb_000159_120 Hb_000159_120 Hb_001731_030--Hb_000159_120 Hb_001731_030--Hb_011224_160 Hb_004586_350--Hb_009079_030 Hb_002477_090 Hb_002477_090 Hb_004586_350--Hb_002477_090 Hb_004586_350--Hb_006198_120 Hb_025336_020 Hb_025336_020 Hb_004586_350--Hb_025336_020 Hb_000920_300 Hb_000920_300 Hb_004586_350--Hb_000920_300 Hb_012022_080 Hb_012022_080 Hb_004586_350--Hb_012022_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83074 3.56882 3.8369 2.48605 2.25488 3.76925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.39492 3.76417 3.21734 10.2791 6.87392

CAGE analysis