Hb_001170_020

Information

Type -
Description -
Location Contig1170: 11789-14760
Sequence    

Annotation

kegg
ID rcu:RCOM_0865030
description hypothetical protein
nr
ID XP_002519839.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O49696
description Aluminum-activated malate transporter 12 OS=Arabidopsis thaliana GN=ALMT12 PE=2 SV=1
trembl
ID B9S1H4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0865030 PE=4 SV=1
Gene Ontology
ID GO:0015743
description aluminum-activated malate transporter 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001170_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005888_020 0.0162102321 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
3 Hb_003050_380 0.0205918401 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
4 Hb_000297_190 0.0232929571 - - cell wall invertase [Manihot esculenta]
5 Hb_002304_030 0.0304843246 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
6 Hb_010288_070 0.0383944537 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
7 Hb_000977_250 0.0402015008 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_000053_010 0.0420205076 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
9 Hb_023313_050 0.0420484303 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
10 Hb_002434_040 0.0422583068 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
11 Hb_005754_050 0.0464103345 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
12 Hb_003605_170 0.0519511656 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
13 Hb_003032_080 0.0541345704 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003836_040 0.0555500491 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
15 Hb_000210_020 0.0566427382 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
16 Hb_005610_070 0.0573099603 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
17 Hb_005280_020 0.0616726275 - - glycine cleavage system h protein, putative [Ricinus communis]
18 Hb_074312_010 0.0649628094 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
19 Hb_014361_160 0.0658486705 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
20 Hb_001710_010 0.066354297 - - Uncharacterized protein TCM_001832 [Theobroma cacao]

Gene co-expression network

sample Hb_001170_020 Hb_001170_020 Hb_005888_020 Hb_005888_020 Hb_001170_020--Hb_005888_020 Hb_003050_380 Hb_003050_380 Hb_001170_020--Hb_003050_380 Hb_000297_190 Hb_000297_190 Hb_001170_020--Hb_000297_190 Hb_002304_030 Hb_002304_030 Hb_001170_020--Hb_002304_030 Hb_010288_070 Hb_010288_070 Hb_001170_020--Hb_010288_070 Hb_000977_250 Hb_000977_250 Hb_001170_020--Hb_000977_250 Hb_005888_020--Hb_000297_190 Hb_005888_020--Hb_002304_030 Hb_005888_020--Hb_010288_070 Hb_005888_020--Hb_003050_380 Hb_005610_070 Hb_005610_070 Hb_005888_020--Hb_005610_070 Hb_003050_380--Hb_010288_070 Hb_003050_380--Hb_002304_030 Hb_003050_380--Hb_000297_190 Hb_003032_080 Hb_003032_080 Hb_003050_380--Hb_003032_080 Hb_000297_190--Hb_002304_030 Hb_000297_190--Hb_010288_070 Hb_003836_040 Hb_003836_040 Hb_000297_190--Hb_003836_040 Hb_002304_030--Hb_010288_070 Hb_002304_030--Hb_005610_070 Hb_010288_070--Hb_003032_080 Hb_010288_070--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_010288_070--Hb_074312_010 Hb_002434_040 Hb_002434_040 Hb_000977_250--Hb_002434_040 Hb_000053_010 Hb_000053_010 Hb_000977_250--Hb_000053_010 Hb_023313_050 Hb_023313_050 Hb_000977_250--Hb_023313_050 Hb_003605_170 Hb_003605_170 Hb_000977_250--Hb_003605_170 Hb_014361_160 Hb_014361_160 Hb_000977_250--Hb_014361_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.276327 0.0643767 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.316097

CAGE analysis