Hb_001170_030

Information

Type -
Description -
Location Contig1170: 20429-27732
Sequence    

Annotation

kegg
ID rcu:RCOM_0865020
description synaptonemal complex protein, putative
nr
ID XP_002519838.1
description synaptonemal complex protein, putative [Ricinus communis]
swissprot
ID Q8RX22
description MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1
trembl
ID B9S1H3
description Synaptonemal complex protein, putative OS=Ricinus communis GN=RCOM_0865020 PE=4 SV=1
Gene Ontology
ID GO:0005515
description mnd1-interacting protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05281: 20429-27626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001170_030 0.0 - - synaptonemal complex protein, putative [Ricinus communis]
2 Hb_001642_070 0.0919574188 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
3 Hb_002908_050 0.0931549552 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
4 Hb_010863_010 0.0933568415 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
5 Hb_007904_130 0.1006572166 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_000025_790 0.1007256975 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
7 Hb_000614_240 0.1026395831 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
8 Hb_002391_210 0.1057851652 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
9 Hb_002153_030 0.1089513655 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
10 Hb_016347_010 0.1107667962 - - protein transporter, putative [Ricinus communis]
11 Hb_004449_080 0.1111642343 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
12 Hb_000340_490 0.1115809165 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
13 Hb_005305_050 0.1125587479 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
14 Hb_001214_090 0.1140379739 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
15 Hb_006909_010 0.1141944605 - - 5-oxoprolinase, putative [Ricinus communis]
16 Hb_000984_170 0.1155581972 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
17 Hb_000011_060 0.1167565646 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
18 Hb_000363_040 0.1175553381 - - Protein transport protein Sec24A, putative [Ricinus communis]
19 Hb_000028_390 0.11757016 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
20 Hb_000209_100 0.1178272679 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001170_030 Hb_001170_030 Hb_001642_070 Hb_001642_070 Hb_001170_030--Hb_001642_070 Hb_002908_050 Hb_002908_050 Hb_001170_030--Hb_002908_050 Hb_010863_010 Hb_010863_010 Hb_001170_030--Hb_010863_010 Hb_007904_130 Hb_007904_130 Hb_001170_030--Hb_007904_130 Hb_000025_790 Hb_000025_790 Hb_001170_030--Hb_000025_790 Hb_000614_240 Hb_000614_240 Hb_001170_030--Hb_000614_240 Hb_004450_070 Hb_004450_070 Hb_001642_070--Hb_004450_070 Hb_016347_010 Hb_016347_010 Hb_001642_070--Hb_016347_010 Hb_000327_250 Hb_000327_250 Hb_001642_070--Hb_000327_250 Hb_019280_010 Hb_019280_010 Hb_001642_070--Hb_019280_010 Hb_000363_040 Hb_000363_040 Hb_001642_070--Hb_000363_040 Hb_000209_100 Hb_000209_100 Hb_001642_070--Hb_000209_100 Hb_001876_010 Hb_001876_010 Hb_002908_050--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_002908_050--Hb_000189_550 Hb_000984_170 Hb_000984_170 Hb_002908_050--Hb_000984_170 Hb_000011_060 Hb_000011_060 Hb_002908_050--Hb_000011_060 Hb_002908_050--Hb_000363_040 Hb_004480_100 Hb_004480_100 Hb_002908_050--Hb_004480_100 Hb_010863_010--Hb_000614_240 Hb_000120_080 Hb_000120_080 Hb_010863_010--Hb_000120_080 Hb_004787_050 Hb_004787_050 Hb_010863_010--Hb_004787_050 Hb_005634_010 Hb_005634_010 Hb_010863_010--Hb_005634_010 Hb_002471_090 Hb_002471_090 Hb_010863_010--Hb_002471_090 Hb_002456_010 Hb_002456_010 Hb_010863_010--Hb_002456_010 Hb_000402_190 Hb_000402_190 Hb_007904_130--Hb_000402_190 Hb_007904_130--Hb_010863_010 Hb_007904_130--Hb_001642_070 Hb_003544_030 Hb_003544_030 Hb_007904_130--Hb_003544_030 Hb_002153_030 Hb_002153_030 Hb_007904_130--Hb_002153_030 Hb_000002_010 Hb_000002_010 Hb_000025_790--Hb_000002_010 Hb_000964_130 Hb_000964_130 Hb_000025_790--Hb_000964_130 Hb_000111_290 Hb_000111_290 Hb_000025_790--Hb_000111_290 Hb_000025_790--Hb_010863_010 Hb_012490_080 Hb_012490_080 Hb_000025_790--Hb_012490_080 Hb_000025_790--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000614_240--Hb_000011_060 Hb_000614_240--Hb_002456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.378 24.5802 9.09946 25.0798 10.2934 14.0819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2984 11.1229 27.1101 47.0441 27.7518

CAGE analysis