Hb_001171_020

Information

Type -
Description -
Location Contig1171: 64265-66195
Sequence    

Annotation

kegg
ID cit:102627755
description gibberellin 3-beta-dioxygenase 3-like
nr
ID XP_006476108.1
description PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
swissprot
ID O24648
description Gibberellin 3-beta-dioxygenase 1 OS=Pisum sativum GN=LE PE=1 SV=1
trembl
ID A0A067KBF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13258 PE=3 SV=1
Gene Ontology
ID GO:0016706
description gibberellin 3-beta-dioxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05288: 64554-65732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001171_020 0.0 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
2 Hb_001372_010 0.0030333266 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_004598_010 0.0033611521 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
4 Hb_182291_010 0.0045847746 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
5 Hb_000514_010 0.0054108856 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
6 Hb_002049_040 0.0056569983 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
7 Hb_006953_010 0.0077394171 - - cytochrome P450, putative [Ricinus communis]
8 Hb_107495_020 0.0105443008 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
9 Hb_001536_070 0.011287311 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
10 Hb_000265_040 0.0114025885 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
11 Hb_075653_010 0.015414215 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
12 Hb_004722_050 0.016206442 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
13 Hb_002305_040 0.0163885213 - - TMV resistance protein N, putative [Ricinus communis]
14 Hb_004228_050 0.021989754 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
15 Hb_000592_150 0.0229233758 - - Os05g0413200 [Oryza sativa Japonica Group]
16 Hb_001926_050 0.0261423952 - - PREDICTED: peroxidase 19 [Jatropha curcas]
17 Hb_002585_050 0.0319445856 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004117_070 0.0341623824 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
19 Hb_000227_010 0.0374936271 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
20 Hb_007816_010 0.039668881 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]

Gene co-expression network

sample Hb_001171_020 Hb_001171_020 Hb_001372_010 Hb_001372_010 Hb_001171_020--Hb_001372_010 Hb_004598_010 Hb_004598_010 Hb_001171_020--Hb_004598_010 Hb_182291_010 Hb_182291_010 Hb_001171_020--Hb_182291_010 Hb_000514_010 Hb_000514_010 Hb_001171_020--Hb_000514_010 Hb_002049_040 Hb_002049_040 Hb_001171_020--Hb_002049_040 Hb_006953_010 Hb_006953_010 Hb_001171_020--Hb_006953_010 Hb_001372_010--Hb_004598_010 Hb_001372_010--Hb_182291_010 Hb_001372_010--Hb_002049_040 Hb_001372_010--Hb_006953_010 Hb_107495_020 Hb_107495_020 Hb_001372_010--Hb_107495_020 Hb_004598_010--Hb_182291_010 Hb_004598_010--Hb_002049_040 Hb_004598_010--Hb_006953_010 Hb_004598_010--Hb_107495_020 Hb_182291_010--Hb_002049_040 Hb_182291_010--Hb_006953_010 Hb_182291_010--Hb_107495_020 Hb_000514_010--Hb_001372_010 Hb_000514_010--Hb_004598_010 Hb_000514_010--Hb_182291_010 Hb_004722_050 Hb_004722_050 Hb_000514_010--Hb_004722_050 Hb_000514_010--Hb_002049_040 Hb_002049_040--Hb_006953_010 Hb_002049_040--Hb_107495_020 Hb_001536_070 Hb_001536_070 Hb_002049_040--Hb_001536_070 Hb_006953_010--Hb_107495_020 Hb_006953_010--Hb_001536_070 Hb_000265_040 Hb_000265_040 Hb_006953_010--Hb_000265_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.111554 0.017518 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis