Hb_001171_030

Information

Type transcription factor
Description TF Family: LUG
Location Contig1171: 68378-80043
Sequence    

Annotation

kegg
ID tcc:TCM_037959
description LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 1
nr
ID XP_012078690.1
description PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
swissprot
ID Q9FUY2
description Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2
trembl
ID A0A067KKJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13259 PE=4 SV=1
Gene Ontology
ID GO:0005515
description transcriptional corepressor leunig-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05289: 68426-77704 , PASA_asmbl_05290: 68546-77712 , PASA_asmbl_05291: 69153-70303 , PASA_asmbl_05292: 75928-76106 , PASA_asmbl_05293: 76219-77704 , PASA_asmbl_05294: 77739-80090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001171_030 0.0 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
2 Hb_003142_040 0.0323759933 - - Sf3a3 [Gossypium arboreum]
3 Hb_002968_070 0.0465915017 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
4 Hb_001723_140 0.0497508664 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
5 Hb_000189_630 0.0565264626 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
6 Hb_000977_300 0.05788473 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
7 Hb_000529_060 0.0589643721 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
8 Hb_001584_350 0.0608653646 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
9 Hb_015183_100 0.0701804542 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
10 Hb_001221_090 0.0702516821 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
11 Hb_000340_030 0.0710702612 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
12 Hb_002045_250 0.0722090643 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
13 Hb_001723_010 0.0729032659 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
14 Hb_004517_020 0.0730079242 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
15 Hb_000823_030 0.0730261854 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
16 Hb_012940_040 0.0736986195 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
17 Hb_001673_050 0.0737563704 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
18 Hb_000996_020 0.0745618916 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
19 Hb_088144_020 0.0746875144 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
20 Hb_000941_030 0.074945294 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]

Gene co-expression network

sample Hb_001171_030 Hb_001171_030 Hb_003142_040 Hb_003142_040 Hb_001171_030--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001171_030--Hb_002968_070 Hb_001723_140 Hb_001723_140 Hb_001171_030--Hb_001723_140 Hb_000189_630 Hb_000189_630 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060 Hb_003142_040--Hb_002968_070 Hb_001953_120 Hb_001953_120 Hb_003142_040--Hb_001953_120 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_003142_040--Hb_000189_630 Hb_003142_040--Hb_001723_140 Hb_002968_070--Hb_001953_120 Hb_002016_090 Hb_002016_090 Hb_002968_070--Hb_002016_090 Hb_000373_170 Hb_000373_170 Hb_002968_070--Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_002968_070--Hb_000996_020 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_001723_140--Hb_000529_060 Hb_000189_630--Hb_000977_300 Hb_004517_020 Hb_004517_020 Hb_000189_630--Hb_004517_020 Hb_005333_140 Hb_005333_140 Hb_000189_630--Hb_005333_140 Hb_005834_040 Hb_005834_040 Hb_000189_630--Hb_005834_040 Hb_000977_300--Hb_004517_020 Hb_000977_300--Hb_000529_060 Hb_000120_910 Hb_000120_910 Hb_000977_300--Hb_000120_910 Hb_000110_350 Hb_000110_350 Hb_000977_300--Hb_000110_350 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8198 38.1754 31.1161 21.614 21.4068 18.4287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6395 8.39334 11.0471 30.7067 22.4103

CAGE analysis