Hb_001171_060

Information

Type -
Description -
Location Contig1171: 115235-117277
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07580g
description POPTRDRAFT_551385; pentatricopeptide repeat-containing family protein
nr
ID XP_012066118.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
swissprot
ID O49287
description Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1
trembl
ID A0A067L3P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25272 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001171_060 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
2 Hb_000432_060 0.1124518077 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_008770_040 0.1154377131 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Malus domestica]
4 Hb_003071_020 0.1183864929 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
5 Hb_002006_040 0.1188743274 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
6 Hb_001366_310 0.125482831 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
7 Hb_003544_110 0.1268010387 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
8 Hb_003373_030 0.1272909535 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
9 Hb_033772_030 0.131771123 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
10 Hb_008770_030 0.1319044038 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
11 Hb_015807_150 0.1320324603 - - actin binding protein, putative [Ricinus communis]
12 Hb_006922_010 0.1344119108 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
13 Hb_000140_230 0.1351756103 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
14 Hb_000976_210 0.1362303841 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
15 Hb_000107_660 0.1366481258 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
16 Hb_000549_040 0.1367671673 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
17 Hb_024404_020 0.1368750905 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
18 Hb_009627_030 0.1376440687 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
19 Hb_000072_120 0.1376745362 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_002056_090 0.1378058441 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001171_060 Hb_001171_060 Hb_000432_060 Hb_000432_060 Hb_001171_060--Hb_000432_060 Hb_008770_040 Hb_008770_040 Hb_001171_060--Hb_008770_040 Hb_003071_020 Hb_003071_020 Hb_001171_060--Hb_003071_020 Hb_002006_040 Hb_002006_040 Hb_001171_060--Hb_002006_040 Hb_001366_310 Hb_001366_310 Hb_001171_060--Hb_001366_310 Hb_003544_110 Hb_003544_110 Hb_001171_060--Hb_003544_110 Hb_000432_060--Hb_008770_040 Hb_080952_010 Hb_080952_010 Hb_000432_060--Hb_080952_010 Hb_168697_010 Hb_168697_010 Hb_000432_060--Hb_168697_010 Hb_000442_080 Hb_000442_080 Hb_000432_060--Hb_000442_080 Hb_000140_230 Hb_000140_230 Hb_000432_060--Hb_000140_230 Hb_172632_110 Hb_172632_110 Hb_008770_040--Hb_172632_110 Hb_003373_030 Hb_003373_030 Hb_008770_040--Hb_003373_030 Hb_001268_110 Hb_001268_110 Hb_008770_040--Hb_001268_110 Hb_000866_170 Hb_000866_170 Hb_008770_040--Hb_000866_170 Hb_000245_040 Hb_000245_040 Hb_008770_040--Hb_000245_040 Hb_000856_180 Hb_000856_180 Hb_003071_020--Hb_000856_180 Hb_006922_010 Hb_006922_010 Hb_003071_020--Hb_006922_010 Hb_000236_410 Hb_000236_410 Hb_003071_020--Hb_000236_410 Hb_002046_020 Hb_002046_020 Hb_003071_020--Hb_002046_020 Hb_001019_180 Hb_001019_180 Hb_003071_020--Hb_001019_180 Hb_001840_090 Hb_001840_090 Hb_003071_020--Hb_001840_090 Hb_000976_210 Hb_000976_210 Hb_002006_040--Hb_000976_210 Hb_002043_140 Hb_002043_140 Hb_002006_040--Hb_002043_140 Hb_023226_080 Hb_023226_080 Hb_002006_040--Hb_023226_080 Hb_003729_030 Hb_003729_030 Hb_002006_040--Hb_003729_030 Hb_000402_230 Hb_000402_230 Hb_002006_040--Hb_000402_230 Hb_009615_170 Hb_009615_170 Hb_002006_040--Hb_009615_170 Hb_001366_310--Hb_003544_110 Hb_143766_060 Hb_143766_060 Hb_001366_310--Hb_143766_060 Hb_012490_090 Hb_012490_090 Hb_001366_310--Hb_012490_090 Hb_001366_310--Hb_000976_210 Hb_003494_020 Hb_003494_020 Hb_001366_310--Hb_003494_020 Hb_000392_150 Hb_000392_150 Hb_001366_310--Hb_000392_150 Hb_012564_030 Hb_012564_030 Hb_003544_110--Hb_012564_030 Hb_002818_030 Hb_002818_030 Hb_003544_110--Hb_002818_030 Hb_003544_110--Hb_003494_020 Hb_004916_010 Hb_004916_010 Hb_003544_110--Hb_004916_010 Hb_048219_010 Hb_048219_010 Hb_003544_110--Hb_048219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.253755 0.894035 0.346402 0.564539 0.405664 0.530274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.154298 0.502974 0.822704 0.669183 0.256737

CAGE analysis