Hb_001172_030

Information

Type -
Description -
Location Contig1172: 123277-128090
Sequence    

Annotation

kegg
ID tcc:TCM_042339
description Nitrate transporter 1.5
nr
ID XP_012083777.1
description PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LQL2
description Protein NRT1/ PTR FAMILY 7.3 OS=Arabidopsis thaliana GN=NPF7.3 PE=1 SV=2
trembl
ID A0A061FSL3
description Nitrate transporter 1.5 OS=Theobroma cacao GN=TCM_042339 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05329: 123611-125657 , PASA_asmbl_05330: 125711-127906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001172_030 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
2 Hb_022815_020 0.0683612557 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
3 Hb_033843_020 0.0912890842 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
4 Hb_035726_020 0.1095926965 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]
5 Hb_115414_010 0.1150457899 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
6 Hb_001003_020 0.1160156664 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
7 Hb_000659_010 0.1182511102 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
8 Hb_035726_010 0.1188882723 - - Insulin-degrading enzyme, putative [Ricinus communis]
9 Hb_004222_010 0.1247988138 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
10 Hb_000567_300 0.1289826312 - - PREDICTED: protein YLS9-like [Jatropha curcas]
11 Hb_074892_010 0.1310951859 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
12 Hb_000380_130 0.1375856283 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
13 Hb_175968_010 0.153106242 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
14 Hb_000061_360 0.155213121 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
15 Hb_003189_030 0.1614688678 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
16 Hb_026284_010 0.1640157167 - - -
17 Hb_001279_220 0.1670538841 - - protein binding protein, putative [Ricinus communis]
18 Hb_046770_010 0.1717779746 - - conserved hypothetical protein [Ricinus communis]
19 Hb_094439_030 0.1752709869 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
20 Hb_008489_010 0.1763199378 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_001172_030 Hb_001172_030 Hb_022815_020 Hb_022815_020 Hb_001172_030--Hb_022815_020 Hb_033843_020 Hb_033843_020 Hb_001172_030--Hb_033843_020 Hb_035726_020 Hb_035726_020 Hb_001172_030--Hb_035726_020 Hb_115414_010 Hb_115414_010 Hb_001172_030--Hb_115414_010 Hb_001003_020 Hb_001003_020 Hb_001172_030--Hb_001003_020 Hb_000659_010 Hb_000659_010 Hb_001172_030--Hb_000659_010 Hb_022815_020--Hb_000659_010 Hb_022815_020--Hb_035726_020 Hb_022815_020--Hb_001003_020 Hb_004222_010 Hb_004222_010 Hb_022815_020--Hb_004222_010 Hb_022815_020--Hb_033843_020 Hb_035726_010 Hb_035726_010 Hb_033843_020--Hb_035726_010 Hb_033843_020--Hb_035726_020 Hb_033843_020--Hb_115414_010 Hb_033843_020--Hb_001003_020 Hb_035726_020--Hb_001003_020 Hb_003189_030 Hb_003189_030 Hb_035726_020--Hb_003189_030 Hb_035726_020--Hb_035726_010 Hb_035726_020--Hb_000659_010 Hb_115414_010--Hb_035726_010 Hb_115414_010--Hb_035726_020 Hb_115414_010--Hb_022815_020 Hb_115414_010--Hb_001003_020 Hb_001003_020--Hb_003189_030 Hb_001003_020--Hb_000659_010 Hb_001003_020--Hb_004222_010 Hb_175968_010 Hb_175968_010 Hb_000659_010--Hb_175968_010 Hb_000659_010--Hb_004222_010 Hb_001279_220 Hb_001279_220 Hb_000659_010--Hb_001279_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00751212 1.25096 4.98503 1.2302 0 0.00704418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0681865 0.187795 0 69.2361 15.8648

CAGE analysis